>BRACKETS
------(((-(-((((((-------((-(((-(-((------((-((((---------------))))--))-----))))))--))--((-(((-----((-((((((------))))-))))----))))-)------))))))---)-)))--------
>Chlamydia trachomatis 1
--------C-U-UGGUGAUA-AU-AGA-GAG-A-GGGA-AACAC-CUGACA--CCAUUCCGAACUCAGAAGUUAAG-CCUCUG-AUCG-CU-GAUGGUA-CU-AUACACAAGA--GU---AUGGGAGAGUAG-GU-C-G-UCGCCA---A-GCAU-------
>Chlamydophila pneumoniae 1
--------C-U-UGGCGAUA-CU-GGA-GAA-A-GGGA-UACAC-CUGAUA--CCAUUCCGAACUCAGAAGUUAAG-CCUUUU-AUCG-CU-GAUGGUA-CU-AUACACAAGA--GU---AUGGGAGAGUAA-GU-C-G-UUGCCA---A-GCUU-------
>Chlamydia muridarum 1
--------C-U-UGGUGAUA-AU-AGA-GAG-A-GGGA-AACAC-CUGAUA--CCAUUCCGAACUCAGAAGUUAAG-CCUCUG-AUCG-CU-GAUGGUA-CU-AUACACAAGA--GU---AUGGGAGAGUAG-GU-C-G-UUGCCA---A-GC---------
>Chlamydia muridarum 2
-------GC-U-UGGUGAUA-AU-AGA-GAG-A-GGGA-AACAC-CUGAUA--CCAUUCCGAACUCAGAAGUUAAG-CCUCUG-AUCG-CU-GAUGGUA-CU-AUACACAAGA--GU---AUGGGAGAGUAG-GU-C-G-UUGCCA---A-GCAUU------
>Chlamydophila pneumoniae 2
-------GC-U-UGGCGAUA-CU-GGA-GAA-A-GGGA-UACAC-CUGAUA--CCAUUCCGAACUCAGAAGUUAAG-CCUUUU-AUCG-CU-GAUGGUA-CU-AUACACAAGA--GU---AUGGGAGAGUAA-GU-C-G-UUGCCA---A-GCUUU------
>Chlamydophila caviae 1
-------GC-U-UGGUGAUA-AU-GGA-AAA-A-GGGA-CACAC-CUGACC--CCAUUCCGAACUCAGAAGUUAAG-CCUUUU-AUCG-CC-GAUGGUA-CU-AUACACAAGA--GU---AUGGGAGAGUAG-GU-C-G-UUGCCA---A-GCUUU------
>Chlamydophila pneumoniae 3
----------U-UGGCGAUA-CU-GGA-GAA-A-GGGA-UACAC-CUGAUA--CCAUUCCGAACUCAGAAGUUAAG-CCUUUU-AUCG-CU-GAUGGUA-CU-AUACACAAGA--GU---AUGGGAGAGUAA-GU-C-G-UUGCCA---A-GCUUU------
>Parachlamydia sp. 1
-------GU-U-UGGUGGCA-UU-AGA-GAA-A-GGGA-AAUAC-CUGAAC--CCAUUCCGAACUCAGAAGUCAAG-CCUUUC-AUCG-CC-GAUGGUA-CU-GCACACAAGA--GU---GUGGGAGAGUAG-GU-C-G-CCGCCA---A-ACU--------
>Chlamydophila abortus 1
-------GC-U-UGGUGAUA-AU-GGA-AAA-A-GGGA-UACAC-CUGAUA--CCAUUCCGAACUCAGAAGUUAAG-CCUUUU-AUCG-CC-GAUGGUA-CU-AUACACAAGA--GU---AUGGGAGAGUAG-GU-C-G-UCGCCA---A-GCU--------
>Candidatus Fritschea bemisiae 1
--------U-U-UGGUGACC-AU-AGA-GAA-G-UGGA-AACAC-CUGAUU--CCAUUCCGAACUCAGCAGUUAAG-CACUUC-AUCG-CC-GAUGGUA-CU-GUACACUAGA--GU---AUGGAAGAGUAG-GA-C-G-UCGCCA---A-AUCU-------
>Dehalococcoides ethenogenes 1
-----UCCC-C-CGGUGGUU-AG-AGC-GGG-G-UGGU-ACCAC-CCGUUC--CCGUCCCGAACACGGUCGUGAAA-CGCCCC-AGCG-CA-GACGAUA-CU-UAGGAGGCAA--CUCC-UUGU--GGAAAA-UA-U-G-CCACUGCCCG-GGGA-------
>Thermomicrobium roseum 1
-----CGUG-C-GCGUGGCCGAG-AGC-GGU-G-UGGC-AACAC-CCCGCU--CCAUCCCGAACCGGGUCGUGCCC-CACACC-AGCG-CCGGAGAGUA-CU-GCGCGGGCAA--CCGC-GUGGGAGGCGAG-GC-C-G-CUCGC----G-CGCACGGU---
>Herpetosiphon aurantiacus 1
--------U-C-CGGUGGCA-AU-GUC-GGA-G-GGGU-CCCAC-CCGUUC--CCAUCCCGAACACGGAAGUUAAG-CCCUCC-AGAG-CC-GAUGGUA-CU-CCGCGGGGAA--CCGC-GCGGGAGAGUAG-GU-C-G-CUGCCG---G-AU---------
>Aquifex aeolicus 1
------CCC-C-UGGUGGCC-AU-AGC-GGG-G-GGGA-AACAC-CCGGUC--CCAUUCCGAACCCGGCAGUUAAG-CCCCCC-AGCG-CC-GAUGAUA-CU-GUGCCGGCAG--CGGC-ACGGGAAAGUAG-GU-C-G-CUGCCA---G-GGG--------
>Deinococcus radiodurans 1
----A-ACC-C-CCGCGCCC-AU-AGC-ACU-G-UGGA-ACCAC-CCCACC--CCAUGCCGAACUGGGUCGUGAAA-CACAGC-AGCG-CC-AAUGAUA-CU-GGGCCCGCAG--GGCC-CCGGAAAAGUCG-GU-C-A-GCGCGG---G-GGCU-------
>Deinococcus radiodurans 3
----AUACC-C-CCGUGCCU-UU-AGC-GCC-U-CGGA-ACCAC-CCCACU--CCAUGCCGAACUGGGUCGUGAAA-CGUGGC-AGCG-CC-UAUGAUA-CU-UGGACCGCAG--GGUC-CUGGAAAAGUCG-GUGC-A-GUGCGG---G-GGUUU------
>Deinococcus radiophilus 1
----AUACC-C-CCGUGCCG-UG-AGC-GCC-U-CGGA-ACCAC-CCCACU--CCAUGCCGAACUGGGUCGUGAAA-CGUGGC-AGCG-CC-UAUGAUA-CU-UGGACCGCAG--GGUC-CUGGGAAAGUCG-GUGC-A-GUGCGG---G-GGUUU------
>Thermus sp. 1
-------UC-C-UCGGGACC-AU-AGC-GGA-G-GGGA-AACAC-CCGGUUU-CCAUUCCGAACCCGGCAGUUAAG-CCCUCC-AGCG-CC-GAUGAUA-CU-GUGCCGGGCGAACGGC-ACGGGAAAGUAG-GU-C-G-UCCCGG---G-GGUU-------
>Thermus sp. 2
-------CU-C-GGACCACC-AU-ACC-GGG-G-GGGA-AACAC-CCGGUC--CCAUUCCGAACCCGGAAGUUAAG-CCCCCC-AGGG-CC-GAUGAUA-GC-CUCGC-CCCGA--GCG-AGGUGAAAGUAG-GU-C-G-UGGUCC---G-GGCAC------
>Deinococcus radiodurans 2
----ACACC-C-CCGUGCCC-AU-AGC-ACU-G-UGGA-ACCAC-CCCACC--CCAUGCCGAACUGGGUCGUGAAA-CACAGC-AGCG-CC-AAUGAUA-CU-CGGACCGCAG--GGUC-CCGGAAAAGUCG-GU-C-A-GCGCGG---G-GGUUU------
>Thermus thermophilus 1
------UCC-C-CCGUGCCC-AU-AGC-GGC-G-UGGA-ACCAC-CCGUUC--CCAUUCCGAACACGGAAGUGAAA-CGCGCC-AGCG-CC-GAUGGUA-CU-GGGCGGGCGA--CCGC-CUGGGAGAGUAG-GU-C-G-GUGCGG---G-GGAUU------
>Thermus thermophilus 2
----AAUCC-C-CCGUGCCC-AU-AGC-GGC-G-UGGA-ACCAC-CCGUUC--CCAUUCCGAACACGGAAGUGAAA-CGCGCC-AGCG-CC-GAUGGUA-CU-GGGCGGGCGA--CCGC-CUGGGAGAGUAG-GU-C-G-GUGCGG---G-GGA--------
>Thermus thermophilus 3
----AAUCC-C-CCGUGCCC-AU-AGC-GGC-G-UGGA-ACCAC-CCGUUC--CCAUUCCGAACACGGAAGUGAAA-CGCGCC-AGCG-CC-GAUGGUA-CU-GGCGG-ACGA---CCG-CUGGGAGAGUAG-GU-C-G-GUGCGG---G-GGA--------
>Thermus aquaticus 1
----A-AUC-C-CCGC--CC-UU-AGC-GGC-G-UGGA-AC-AC-CCGUUC--CCAUUCCGAACACGGAAGUGAAA-CGCGCC-AGCG-CC-GAUGGUCACU-GGGACCGCAG--GGUC-CU-GGAGAGUAG-GUGCUG-GUGCGG---G-GAU--------
>Acholeplasma laidlawii 1
--------U-C-UGGUGACG-AUAGGU-AAG-A-UGG--UUCAC-CUGUUC--CCAUCCCGAACACAGAAGUUAAG-CAUCUU-AGCG-CC-GACGAUA-GU-UAUU--ACA-----AU-UAGCGAAAAUAG-GA-C-G-UUGCCA---G-GC---------
>Acholeplasma laidlawii 2
--------U-C-UGGUGACG-AU-GGC-AAG-A-UGU--UCCAC-CUGUUC--CCUACCCGAAUAUAGAAGUUAAG-CAUCUU-AGCG-CC-GACGAUA-GU-UAUU--ACA-----AU-UAGCGAAAAUAG-GA-C-G-UUGCCA---G-GC---------
>Acholeplasma laidlawii 3
--------U-C-UGGUGACG-AU-GGC-AAG-A-UGGU-UCCAC-CUGUUC--CCAUCCCGAACACAGAAGUUAAG-CAUCUU-AGCG-CC-GACGAUA-GU-UAUU--ACA-----AU-UAGCGAAAAUAG-GA-C-G-UUGCCA---G-GC---------
>Acholeplasma modicum 1
----------W-UGGUGACG-AU-GGC-GAA-G-UGGA-UCCAC-CUGUUC--CCAUCUCGAACACAGAAGUUAAG-CACUUC-AGCG-UC-GAAAAUA-GU-CC----UAAG-------GGGCGAAGAUAG-AA-C-G-UUGCCA---G-GC---------
>Amphibacillus xylanus 1
--------C-U-UCGUGACA-AU-AGC-GAA-G-AGGU-CACAC-CUGUUC--CCAUACCGAACACAGAAGUCAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-UGGGGGUUUU--CCCC-CUGCGAGAGUAG-GA-C-G-UCGCUA---A-G----------
>Bacillus amyloliquefaciens 1
--------U-C-UGGUGACU-AU-AGC-GGA-G-GGGC-AACAC-CCGUAC--CCAUCCCGAACACGGACGUGAAG-ACCUCC-AGCG-CC-GAGAAUA-CU-GGGAGGGCAG--CCUC-CUGGGAAAGUAG-GU-C-G-UUGCCA---G-GC---------
>Bacillus anthracis 1
--------U-U-UGGUGAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UCGCCA---A-GC---------
>Bacillus anthracis 10
--------U-C-UGGUAAUG-AU-GGC-AGA-G-AGGC-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UUGCCA---G-GCAAA------
>Bacillus anthracis 2
--------U-C-UGGUAAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UUGCCA---G-GC---------
>Bacillus anthracis 3
--------U-C-UGGUAAUG-AU-GGC-AGA-G-AGGC-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UUGCCA---G-GC---------
>Bacillus anthracis 4
--------U-U-UGGUGAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UCGCCA---A-GCAAC------
>Bacillus anthracis 5
--------U-C-UGGUAAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UUGCCA---G-GCUAA------
>Bacillus anthracis 6
--------U-U-UGGUGAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UCGCCA---A-GCUAU------
>Bacillus anthracis 7
--------U-U-UGGUGAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UCGCCA---A-GCAAG------
>Bacillus anthracis 8
--------U-U-UGGUGAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UCGCCA---A-GCAAA------
>Bacillus anthracis 9
--------U-C-UGGUAAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UUGCCA---G-GCAAU------
>Bacillus cereus 1
--------U-U-UGGUGAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UCGCCA---A-G----------
>Bacillus cereus 10
----------C-UGGUAAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UUGCCA---G-GCAUCACCAUU
>Bacillus cereus 11
--------U-C-UGGUAAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UUGCCA---G-GC---------
>Bacillus cereus 2
--------U-U-UGGUGAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UCGCCA---A-GC---------
>Bacillus cereus 4
--------U-C-UGGUAAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UUGCCA---G-GCAAA------
>Bacillus cereus 5
----------U-UGGUGAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UCGCCA---A-GCAAC------
>Bacillus cereus 6
------------UGGUAAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UUGCCA---G-GC---------
>Bacillus cereus 7
----------U-UGGUGAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UCGCCA---A-GCUAU------
>Bacillus cereus 8
----------U-UGGUGAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UCGCCA---A-GCAAG------
>Bacillus cereus 9
----------U-UGGUGAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UCGCCA---A-GCAAA------
>Bacillus clausii 1
--------U-C-CGGUGACA-AU-GGC-AAA-G-AGGU-CACAC-CCGUUC--CCAUGCCGAACACGGCCGUUAAG-CUCUUU-UGCG-CC-GAUGGUA-GU-UGGAGGCUU---CCUC-CCGCGAGAGUAG-GA-C-G-UUGCCG---G-GC---------
>Bacillus clausii 2
--------U-C-CGGUGACA-AU-GGC-AAA-G-AGGU-CACAC-CCGUUC--CCAUGCCGAACACGGCCGUUAAG-CUCUUU-UGCG-CC-GAUGGUA-GU-UGGAGGCUU---CCUC-CUGCGAGAGUAG-GA-C-G-UUGCCG---G-GC---------
>Bacillus clausii 3
--------U-C-CGGUGACA-AU-GGC-AAA-G-AGGU-CACAC-CCGUUC--CCAUGCCGAACACGGCCGUUAAG-CUCUUU-UGCG-CC-GAUGGUA-GU-UGGAGGCUU---CCUC-CUGUGAGAGUAG-GA-C-G-UUGCCG---G-GC---------
>Bacillus firmus 1
--------U-C-UGGUGGCG-AU-AGC-GAG-A-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUUCUC-AGCG-CC-GAUGGUA-GU-UAGGGGCUG---UCCC-CUGUGAGAGUAG-GA-C-G-CUGCCA---G-GC---------
>Bacillus halodurans 1
--------U-U-UGGUGGCG-AU-AGC-GAA-G-AGGU-CACAC-CCGUUC--CCAUGCCGAACACGGUCGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-UGGGGCCUU---GCCC-CUGCGAGAGUAG-GA-C-G-CUGCCA---A-GC---------
>Bacillus halodurans 2
--------U-U-UGGUGGCG-AU-AGC-GAA-G-AGGC-CACAC-CCGUUC--CCAUGCCGAACACGGUCGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-UGGGGGCUU---CCCC-CUGCGAGAGUAG-GA-C-G-CUGCCA---A-AC---------
>Bacillus halodurans 3
--------U-U-UGGUGGCG-AU-AGC-GAA-G-AGGC-CACAC-CCGUUC--CCAUGCCGAACACGGUCGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-UGGGGGCUU---CCCC-CUGCGAGAGUAG-GA-C-G-CUGCCA---A-GC---------
>Bacillus halodurans 4
--------U-U-UGGUGGCG-AU-AGC-GAA-G-AGGC-CACAC-CCGUUC--CCAUGCCGAACACGGUCGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-UGGGGCCUU---GCCC-CUGCGAGAGUAG-GA-C-G-UUGCCA---A-GC---------
>Bacillus halodurans 5
--------U-U-UGGUGGCG-AU-AGC-GAA-G-AGGC-CACAC-CCGUUC--CCAUGCCGAACACGGUCGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-UGGGGACUU---CCCC-CUGCGAGAGUAG-GA-C-G-CUGCCA---A-GC---------
>Bacillus halodurans 6
--------U-U-UGGUGGCG-AU-AGC-GAA-G-AGGC-CACAC-CCGUUC--CCAUGCCGAACACGGUCGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-UGGGGGCUU---CCCC-CUGCGAGAGUAG-GA-C-G-CUGCCA---A-G----------
>Bacillus licheniformis 5
----------U-UGGUGGCG-AU-AGC-GAA-G-AGGU-CACAC-CCGUUC--CCAUGCCGAACACGGAAGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-UGGGGGCUU---CCCC-CUGUGAGAGUAG-GA-C-G-CCGCCA---A-GCG--------
>Bacillus licheniformis 6
--------U-U-UGGUGGCG-AU-AGC-GAA-G-AGGU-CACAC-CCGUUC--CCAUGCCGAACACGGAAGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-UGGGGGCUU---CCCC-CUGUGAGAGUAG-GA-C-G-CCGCCA---A-G----------
>Bacillus megaterium 1
--------U-C-UGGUGGCG-AU-AGC-GAA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUUU-AGCG-CC-AAUGGUA-GU-UGGGACUUU---GUCC-CUGUGAGAGUAG-GA-C-G-UUGCCA---G-GC---------
>Bacillus megaterium 2
--------U-C-UGGUGGCG-AU-AGC-GAA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUUU-AGCG-CC-GAUGGUA-GU-UGGGACUUU---GUCC-CUGUGAGAGUAG-GA-C-G-UUGCCA---G-GC---------
>Bacillus methanolicus 1
--------Y-Y-UGGUGGCG-AU-GGC-GAG-A-AGGU-CACAC-CCGUUC--CCAURCCGAACACGGAAGUUAAG-CUUCUC-AGCG-CC-GAUGGUA-GU-UGGGGCAUU---GCCC-CUGCGAGAGUAG-GA-C-G-CUGCCA---G-GC---------
>Bacillus subtilis 4
--------U-U-UGGUGGCG-AU-AGC-GAA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-CGGGGGUUU---CCCC-CUGUGAGAGUAG-GA-C-G-CCGCCA---A-GC---------
>Bacillus subtilis 5
----------U-UGGUGGCG-AU-AGC-GAA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-CGGGGGUUU---CCCC-CUGUGAGAGUAG-GA-C-G-CCGCCA---A-GC---------
>Bacillus thuringiensis 1
----------U-UGGUGAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UCGCCA---A-GCAAC------
>Bacillus thuringiensis 2
------------UGGUAAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UUGCCA---G-GC---------
>Bacillus thuringiensis 3
----------U-UGGUGAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UCGCCA---A-GCUAU------
>Bacillus thuringiensis 4
----------U-UGGUGAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UCGCCA---A-GCAAG------
>Bacillus thuringiensis 5
----------U-UGGUGAUG-AU-GGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UCGCCA---A-GCAAA------
>Bacillus thuringiensis 6
------------UGGUAAUG-AU-GGC-AGA-G-AGGC-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUCU-AGCG-CC-GAUGGUA-GU-UGGGACCUU---GUCC-CUGUGAGAGUAG-GA-C-G-UUGCCA---G-GC---------
>Bacillus licheniformis 1
--------U-C-UGGUGAUG-AU-GGC-GAA-G-AGGU-CACAC-CCGUUC--CCAUGCCGAACACGGAAGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-UGGGGGCUU---CCCC-CUGCGAGAGUAG-GA-C-A-UCGCCA---G-GC---------
>Bacillus licheniformis 2
--------U-U-UGGUGGCG-AU-AGC-GAA-G-AGGU-CACAC-CCGUUC--CCAUGCCGAACACGGAAGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-UGGGGGCUU---CCCC-CUGUGAGAGUAG-GA-C-G-CCGCCA---A-GC---------
>Bacillus methanolicus 10
--------Y-Y-UGGUGGCG-AU-GGC-GAG-A-AGGU-CACAC-CCGUUC--CCAUGCCGAACACGGAAGUUAAG-CUUCUC-AGCG-CC-GAUGGUA-GU-UGGGGCAUU---GCCC-CUGCGAGAGUAG-GA-C-G-UUGCCA---G-GC---------
>Bacillus methanolicus 2
--------Y-Y-UGGUGGCG-AU-GGC-GAG-A-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAGGUUAAG-CUUCUC-AGCG-CC-GAUGGUA-GU-UGGGGCAUU---GCCC-CUGCGAGAGUAG-GA-C-G-UUGCCA---G-GC---------
>Bacillus methanolicus 3
--------Y-Y-UGGUGGCG-AU-GGC-GAG-A-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAGGUUAAG-CUUCUC-AGCG-CC-GAUGGUA-GU-UGGGGCAUU---GCCC-CUGYGAGAGUAG-GA-C-G-CUGCCA---G-GC---------
>Bacillus methanolicus 4
--------Y-Y-UGGUGGCG-AU-GGC-GAG-A-AGGU-CACAC-CCGUUC--CCAUGCCGAACACGGAGGUUAAG-CUUCUC-AGCG-CC-GAUGGUA-GU-UGGGGCAUU---GCCC-CUGCGAGAGUAG-GA-C-G-CUGCCA---G-GC---------
>Bacillus methanolicus 5
--------Y-Y-YGGUGGAU-UA-GGC-GAA-G-AGGU-UACAC-CCGUUC--CCAUCCCGAACACAGCCGAGAAA-CUCUUC-AGCG-CC-GAUGGUA-GU-UGGGGGUCU---CCCC-CUGUGAGAGCAG-GA-C-G-CCGCUC---G-GG---------
>Bacillus methanolicus 6
--------Y-Y-UGGUGGCG-UU-GGC-GAG-A-AGGU-CACAC-CCGUUC--CCAUGCCGAACACGGAAGUUAAG-CUUCUC-AGCG-CC-GAUGGUA-GU-UGGGGCAUU---GCCC-CUGCGAGAGUAG-GA-C-G-CUGCCA---G-GC---------
>Bacillus methanolicus 7
--------C-C-UGGUGGCG-AU-GGC-GAG-A-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUUCUC-AGCG-CC-GAUGGUA-GU-UGGGGCAUU---GCCC-CUGCGAGAGUAG-GA-C-G-CUGCCA---G-GC---------
>Bacillus methanolicus 8
--------C-C-UGGUGGCG-AU-GGC-GAG-A-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUUCUC-AGCG-CC-GAUGGUA-GU-UGGGGCAUU---GCCC-CUGCGAGAGUAG-GA-C-G-UUGCCA---G-GC---------
>Bacillus methanolicus 9
--------C-C-UGGUGGCG-AU-GGC-GAG-A-AGGA-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUUCUC-AGCG-CC-GAUGGUA-GU-UGGGGCAUU---GCCC-CUGCGAGAGUAG-GA-C-G-CUGCCA---G-GC---------
>Bacillus sp. 1
--------U-C-UGGUGAUG-AU-GGC-GAA-G-AGGU-CACAC-CCGUUC--CCAUGCCGAACACGGAAGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-CGGGGGCUU---CCCC-CUGUGAGAGUAG-GA-C-A-UCGCCA---G-GC---------
>Bacillus sp. 2
--------U-U-UGGUGGCG-AU-AGC-GAA-G-AGGU-CACAC-CCGUUC--CCAUGCCGAACACGGAAGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-CGGGGGUUU---CCCC-CUGUGAGAGUAG-GA-C-G-CCGCCA---A-GC---------
>Bacillus subtilis 1
--------U-C-UGGUGAUG-AU-GGC-GAA-G-AGGU-CACAC-CCGUUC--CCAUGCCGAACACGGAAGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-CGGGGGUUU---CCCC-CUGUGAGAGUAG-GA-C-A-UCGCCA---G-GC---------
>Bacillus subtilis 2
--------U-U-UGGUGGCG-AU-AGC-GAA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-CGGGGGUUU---CCCC-CUGUGAGAGUAG-GA-C-G-CCGCCA---A-GC---------
>Bacillus subtilis 6
--------U-U-UGGUGGCG-AU-AGC-GAA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGUAGUUAAG-CUCUUC-AGCG-CC-GAUGGUG-AG-UGGGGGCUU---CCCC-CUGUGAGAGUAG-GA-C-G-CCGCCA---A-GC---------
>Brevibacillus brevis 1
--------U-C-UGGUGAUG-AU-GGC-GGA-G-GGGA-CACAC-CCGUUC--CCAUACCGAACACGGCCGUUAAG-CCCUCC-AGCG-CC-AAUGGUA-CU-UGCUCCGCAG--GGAG-CCGGGAGAGUAG-GA-C-G-UCGCCA---G-GC---------
>Candidatus Phytoplasma asteris 1
--------C-U-UGGUGCAU-AA-AAC-UAA-G-GGGC-AACAC-CUGUUC--CCAUCCCGAACACAGCAGUUAAG-UCCUUA--GUA-CU-GACAAUA-GU-UC----UUUAUU-----GAGCGAAGAUAG-GG-A-G-U-GCCA---A-GG---------
>Clostridium acetobutylicum 1
--------U-C-CGGUGACC-AU-AGC-UUG-G-UUGU-AACAC-CCGUUC--CCAUACCGAACACGAAGGUUAAG-AACCAA-AGCG-CC-GAUGGUA-CU-GCAGGGGCAG--CCCU-GUGGGAGAGUAG-GU-C-A-UUGCCG---G-GU---------
>Clostridium acetobutylicum 2
--------U-C-CGGUGACU-AU-AGC-UUG-G-UUGU-AACAC-CCGUUC--CCAUACCGAACACGAAGGUUAAG-AACCAA-AGCG-CC-GAUGGUA-CU-GCAGGGGCAG--CCCU-GUGGGAGAGUAG-GU-C-A-UUGCCG---G-GU---------
>Clostridium acetobutylicum 3
--------U-C-CGGUGAUC-AU-AGC-UUG-G-UUGU-AACAC-CAGUUC--CCAUACCGAACACGAAGGUUAAG-AACCAA-AGCG-CC-GAUGGUA-CU-GCAGGGGCAA--CCGU-GUGUCAAAUGAG-GU-C-A-UUGCCG---G-GU---------
>Clostridium acetobutylicum 4
--------U-C-CGGUGACU-AU-AGC-UUG-G-UUGU-AACAC-CCGUUC--CCAUACCGAACACGAAGGUUAAG-AACCAA-AGCG-CC-GAUGGUA-CU-GCAGGGGCAG--CCCU-GUGGGACAGUAG-GU-C-A-UUGCCG---G-GU---------
>Clostridium acetobutylicum 5
--------U-C-CGGUGACC-AU-AGC-UUG-G-UUGU-AACAC-CCGUUC--CCAUACCGAACACGAAGGUUAAG-AACCAA-AGCG-CC-GAUGGUA-CU-GCAGGGGCAG--CCCU-GUGGGACAGUAG-GU-C-A-UUGCCG---G-GU---------
>Clostridium pasteurianum 1
--------U-C-CAGUGUCU-AU-GAC-UUA-G-AGGU-AACAC-UCCUUC--CCAUUCCGAACAGGCAGGUUAAG-CUCUAA-UGUG-CU-GAUGGUA-CU-GCAGGGGAAG--CCCU-GUGGAGAAGUAG-GU-C-G-ACGCUG---G-GU---------
>Clostridium bifermentans 1
--------D-G-UGGUUAUU-AC-AGC-AAA-G-AGGA-UACAC-CUGUUC--CCAUUCCGAACACAGAAGUUAAG-CUCUUU-AGCG-CC-GAUGGUA-CU-UGGUGGGAAG--CUGC-CUGGGAGAGUAG-GA-C-G-UAGCCG---C-GU---------
>Clostridium butyricum 1
--------U-C-UGGUGAUG-AU-GGC-AUA-G-AGGU-AACAC-UCCUUC--CCAUUCCGAACAGGACAGUUAAG-GUCUAU-AGCG-CC-GAUGGUA-CU-GCAUGGGAGA--CUGU-GUGGAAGAGUAG-GA-C-G-UCGCCA---G-GU---------
>Clostridium butyricum 2
--------U-C-UGGUGAUG-AU-GGC-AUA-G-AGGU-AACAC-UCCUUU--CCAUUCCGAACAGGACAGUUAAG-GUCUAU-AGCG-CC-GAUGGUA-CU-GCAUGGGAGA--CUGU-GUGGAAGAGUAG-GA-C-G-UCGCCA---G-GU---------
>Clostridium carnis 1
--------C-C-UAGUGAUG-AU-GGC-GUA-G-AGGA-AACAC-UCCUUU--CCAUUCCGAACAGGACAGUUAAG-CUCUAC-AGCG-UC-GAUGGUA-CU-GCACGGGUGA--CUGU-GUGGGAGAGUAG-AA-C-G-UUGCUA---G-GU---------
>Clostridium innocuum 1
--------U-C-UGGUGGCG-AU-AGC-GAU-G-UGGA-UACAC-CUGUUC--UCAUCCCGAACACAGAAGUUAAG-CAUAUC-AGCG-GC-GACAAUA-UC-UGGA--CUGGC---UC-CAGUGAAGAUAG-CA-C-G-CUGCCA---G-GU---------
>Clostridium tyrobutyricum 1
--------D-C-AGGUGGUG-AU-GGC-GGA-A-AGGU-CACAC-CCGAAC--ACAUCCCGAACUCGGAAGUUAAG-CUUUCC-AGCG-CC-GAUGGUA-GU-UGGGGGUUU---CCCC-CUGCGAGAGUAG-GA-C-G-UUGCCG---G-GC---------
>Clostridium tyrobutyricum 2
--------D-C-AGGUGGCG-AU-GGC-GGA-A-AGGU-CACAC-CCGUUC--CCAUCCCGAACACGGAAGUUAAG-CUUUCC-AGCG-CC-GAUGGUA-GU-UGGGGGUCU---CCCC-CUGCGAGAGUAG-GA-C-G-CUGCCG---G-GC---------
>Clostridium tyrobutyricum 3
--------D-C-AGGUGGCG-AU-GGC-GGA-A-AGGU-CACAC-CCGUUC--CCAUCCCGAACACGGAAGUUAAG-CUUUCC-AGCG-CC-GAUGGUA-GU-UGGGGGUCU---CCCC-CUGCGAGAGUAG-GA-C-G-UUGCCG---G-GC---------
>Clostridium tyrobutyricum 4
--------U-C-AGGUGGCG-AU-GGC-GGA-A-AGGU-CACAC-CCGAAC--ACAUCCCGAACUCGGAAGUUAAG-CUUUCC-AGCG-CC-GAUGGUA-GU-UGGGGGUUU---CCCC-CUGCGAGAGUAG-GA-C-G-CUGCCG---G-GC---------
>Enterococcus faecalis 1
--------U-G-UGGUGGCG-AU-AGC-GAG-A-AGGA-UACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUUCUU-AGCG-CC-GAUUGUA-GU-GAAGGGUUU---CCCU-UUGUGAGAGUAG-GA-C-G-UCGCCA---C-GC---------
>Colwellia hadaliensis 1
------UGU-U-UAGCGACC-AU-AGC-GCU-G-UGGC-CCCAC-CUGAUC--CCAUUCCGAACUCAGCAGUGAAA-CGCAGU-UGCG-CC-GAUGGUA-GU-GUGGG-AGUU---CCC-AUGUGAGAGUAG-GA-C-A-UCGUUA---A-ACAU-------
>Enterococcus faecalis 2
--------U-G-UGGUGGCG-AU-AGC-GAG-A-AGGA-UACAC-CUGUAA--CCAUGCCGAACACAGAAGUUAAG-CUUCUU-AGCG-CC-GAUUGUA-GU-GAGGGGGUUG--CCCC-UUGUGAGAGUAG-GA-C-G-UCGCCA---C-GC---------
>Erysipelothrix rhusiopathiae 1
--------U-C-UGGUGAUU-UU-AGC-GAA-G-UGGU-CACAC-CUGUUC--CCAUCUCGAACACAGAAGUUAAG-CACUUU-AGCG-GC-GACAAUA-UC-UAGC--CACGC---GC-UAGUGAAGAUAG-UU-C-A-UCGCCA---G-GU---------
>Erysipelothrix rhusiopathiae 2
--------U-C-UGGUGAUU-UU-AGC-GAA-G-UGGU-CACAC-CUGUUC--CCAUCUCGAACACAGAAGUUAAG-CACUUU-AGCG-GC-GACAAUA-UC-UAGC--CACGC---GC-UAGUGAAGAUAG-UU-C-A-UUGCCA---G-GU---------
>Erysipelothrix rhusiopathiae 3
--------U-C-UGGUGGUU-UU-AGC-GAA-G-UGGU-CACAC-CUGUUC--CCAUCUCGAACACAGAAGUUAAG-CACUUU-AGCG-GC-GACAAUA-UC-UAGC--CAAGC---GC-UAGUGAAGAUAG-UU-C-A-UCGCCA---G-GU---------
>Erysipelothrix tonsillarum 1
--------U-C-UGGUGAUU-UG-AGC-GAA-G-UGGU-CACAC-CUGUUC--CCAUCUCGAACACAGAAGUUAAG-CACUUU-AGCG-GC-GACAAUA-UC-UAGC--CACGC---GC-UAGUGAAGAUAG-UU-C-A-UUGCCA---G-GU---------
>Finegoldia magna 1
--------U-A-UGGUGAUA-AA-AGC-AAG-A-GGGA-UACAC-CUGUAC--CCAUGCCGAACACAGAAGUUAAG-CCUCUU-AACG-CC-GAUGGUA-CU-ACGAUGGAAA--CGUC-GUGGGAGAGUAG-GU-A-G-UCGCCA---A-AC---------
>Finegoldia magna 2
----------A-UGGUGAUA-AA-AGC-AAG-A-GGGA-UACAC-CUGUAC--CCAUGCCGAACACAGAAGUUAAG-CCUCUU-AACG-CC-GAUGGUA-CU-ACGAUGGAAA--CGUC-GUGGGAGAGUAG-GU-A-G-UCGCCA---A-ACA--------
>Geobacillus kaustophilus 1
--------C-C-UAGUGGCU-AU-GGC-GGA-G-GGGA-AACAC-CCGUUC--CCAUCCCGAACACGGAAGUUAAG-CCCUCC-AGCG-CC-GAUGGUA-GU-UGGGGCCAGC--GCCC-CUGCAAGAGUAG-GU-C-G-UUGCUA---G-GC---------
>Geobacillus kaustophilus 2
--------C-C-UAGUGGCU-AU-GGC-GGA-G-GGGA-AACAC-CCGUUC--CCAUCCCGAACACGGAAGUUAAG-CCCUCC-AGCG-CC-GAUGGUA-GU-UGGGGCCAGC--GUCC-CUGCAAGAGUAG-GU-C-G-CUGCUA---G-GC---------
>Geobacillus kaustophilus 3
------------UAGUGGCU-AU-GGC-GGA-G-GGGA-AACAC-CCGUUC--CCAUCCCGAACACGGAAGUUAAG-CCCUCC-AGCG-CC-GAUGGUA-GU-UGGGGCCAGC--GCCC-CUGCAAGAGUAG-GU-C-G-CUGCUA---G-GC---------
>Geobacillus kaustophilus 4
-------GC-C-UAGUGGCU-AU-GGC-GGA-G-GGGA-AACAC-CCGUUC--CCAUCCCGAACACGGAAGUUAAG-CCCUCC-AGCG-CC-GAUGGUA-GU-UGGGGCCAGC--GCCC-CUGCAAGAGUAG-GU-C-G-CUGCUA---G-G----------
>Geobacillus kaustophilus 6
--------C-C-UAGUGGCU-AU-GGC-GGA-G-GGGA-AACAC-CCGUUC--CCAUCCCGAACACGGAAGUUAAG-CCCUCC-AGCG-CC-GAUGGUA-GU-UGGGGCCAGC--GCCC-CUGCAAGAGUAG-GU-C-G-CUGCUA---G-GC---------
>Geobacillus kaustophilus 7
--------------GUGGUG-AU-AGC-GGA-G-GGGA-AACAC-CCGUUC--CCAUCCCGAACACGGAAGUUAAG-CCCUCC-AGCG-CC-GAUGGUA-GU-UGGGGCCAGC--GCCCCUGCAAG-AGUAG-GU-C-G-CUGCUA---G-GC---------
>Geobacillus stearothermophilus 1
--------C-C-UAGUGGUG-AU-AGC-GGA-G-GGGA-AACAC-CCGUUC--CCAUCCCGAACACGGAAGUUAAG-CCCUCC-AGCG-CC-GAUGGUA-GU-UGGGGCCAGC--GCCC-CUGCAAGAGUAG-GU-C-G-CUGCUA---G-GC---------
>Geobacillus stearothermophilus 3
--------C-C-UAGUGACA-AU-AGC-GGA-G-AGGA-AACAC-CCGUUC--CCAUCCCGAACACGGAAGUUAAG-CUCUCC-AGCG-CC-GAUGGUA-GU-UGGGGCCAGC--GCCC-CUGCAAGAGUAG-GU-C-G-UUGCUA---G-GC---------
>Lactobacillus acidophilus 1
----------A-CGGUGGCG-AA-AGC-AAG-A-AGGA-UACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUUCUU-AACG-CC-GAAAGUA-GU-UGGUGGGCAA--CUGC-CUGCGAGGAUAG-GA-A-G-CUGCCG---U-GCU--------
>Geobacillus stearothermophilus 2
--------C-C-UAGUGGUG-AU-AGC-GGA-G-GGGA-AACAC-CCGUUC--CCAUCCCGAACACGGAAGUUAAG-CCCUCC-AGCG-CC-GAUGGUA-GU-UGGGGCCAGC--GCCC-CUGCAAGAGUAG-GC-C-G-CUGCUA---G-GC---------
>Geobacillus stearothermophilus 4
--------C-C-UAGUGACA-AU-AGC-GAG-A-GAGGAAACAC-CCGUCU--CCAUCCCGAACACGAAGGUUAAGCUCUCCC-AGCG-CC-GAUGGUA-GU-UGGGGCCAGC--GCCC-CUGCAAGAGUAG-GU-U-G-UCGCUA---G-GC---------
>Lactobacillus brevis 1
--------U-G-UGGUGGCG-AU-AGC-CUG-A-AGGA-UACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUUCAG-CACG-CC-GAUAGUA-GU-UGGGGGAUCG--CCCC-CUGCGAGGAUAG-GA-C-G-UUGCCA---C-GC---------
>Lactobacillus delbrueckii 1
--------U-G-CGGUGGCA-AU-GGC-AAU-A-AGGA-UACAC-CUGUUC--CCAUGCCGAACACAGUAGUUAAG-CUUCUU-AACG-CC-GAAAGUA-GU-UGGUGGGAAA--CUGC-CUGCGAGGAUAG-GA-A-G-CUGCCG---C-GC---------
>Lactobacillus delbrueckii 2
--------U-G-CGGUGGCA-AU-GGC-AAG-A-AGGA-UACAC-CUGUUC--CCAUGCCGAACACAGUAGUUAAG-CUUCUU-AACG-CC-GAAAGUA-GU-UGGUGGGAAA--CUGC-CUGCGAGGAUAG-GA-A-G-CUGCCG---C-GC---------
>Lactobacillus johnsonii 1
------------CGGUGGCG-AU-GGC-AAG-A-AGGA-UACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUUCUU-AACG-CC-GAGAGUA-GU-UGGUGGGAAA--CUGC-CUGCGAGGGUAG-GC-A-G-UCGCCG---U-GCU--------
>Lactococcus lactis 2
--------U-U-UGGUCAUC-AU-UGC-GAU-G-GAGA-UACAC-CUGUUC--CCAUGUCGAACACAGAAGUUAAG-UCCAUC-UACG-GC-GGAAGUA-CU-UGGGGGUUG---CCCC-CU-GGGAGAUAGGCG-A-G-UGGCCA---A-GU---------
>Lactobacillus plantarum 1
--------U-G-UGGUGACG-AU-GGC-GAG-A-AGGA-UACAC-CUGUUC--CCAUGUCGAACACAGAAGUUAAG-CUUCUU-AGCG-CC-GAGAGUA-GU-UGGGGGAUCG--CUCC-CUGCGAGGGUAG-GA-C-G-UUGCCA---U-GCGA-------
>Lactobacillus plantarum 2
--------U-G-UGGUGACG-AU-GGC-GAG-A-AGGA-UACAC-CUGUUC--CCAUGUCGAACACAGAAGUUAAG-CUUCUU-AGCG-CC-GAGAGUA-GU-UGGGGGAUCG--CUCC-CUGCGAGGGUAG-GA-C-G-UUGCCA---U-GCAA-------
>Lactobacillus plantarum 3
--------U-G-UGGUGACG-AU-GGC-GAG-A-AGGA-UACAC-CUGUUC--CCAUGUCGAACACAGAAGUUAAG-CUUCUU-AGCG-CC-GAGAGUA-GU-UGGGGGAUCG--CUCC-CUGCGAGGGUAG-GA-C-G-UUGCCA---U-GC---------
>Lactococcus lactis 1
--------U-U-UGGUCAUC-AU-UGC-GAU-G-GAGA-UACAC-CUGUUC--CCAUGUCGAACACAGAAGUUAAG-UCCAUC-UACG-GC-GGAAGUA-CU-UGGGGGUUG---CCCC-CUGGGAGAUAGG-CG-A-G-UGGCCA---A-GU---------
>Lactococcus lactis 3
-------UU-U-UGGUCAUC-AU-UGC-GAU-G-GAGA-UACAC-CUGUUC--CCAUGUCGAACACAGAAGUUAAG-UCCAUC-UACG-GC-GGAAGUA-CU-UGGGGGUUG---CCCC-CUGGGAGAUAUG-CG-A-G-UGGCCA---A-GU---------
>Lactococcus lactis 4
--------U-U-UGGUAUUU-AU-UGC-AUA-G-GAGA-UAUAC-CUGUUC--CCAUGUCGAACACAGAAGUCAAG-UCCUUU-UGCG-CU-GGAAGUA-CU-UGGGGGUUG---CCCC-CUGGGAGAUAAA-GA-C-G-AUGCCA---A-GU---------
>Lactococcus lactis 5
--------U-U-UGGUCAUC-AU-UGC-GAU-G-GAGA-UACAC-CUGUUC--CCAUGUCGAACACAGAAGUUAAG-UCCAUC-UACG-GC-GGAAGUA-CU-UGGGGGUUG---CCCC-CUGGGAGAUAUG-CG-A-G-UGGCCA---A-GU---------
>Leuconostoc mesenteroides 1
--------U-G-UCGUGUCG-AU-AGC-AUA-G-AGGA-CACAC-CUGUUC--CCAUACCGAACACAGAAGUUAAG-CUCUAU-AGCG-CC-GAAAGUA-GU-UGGAGGAUCG--CUUC-CUGCGAGGAUAG-GA-C-G-AUGCGA---C-AG---------
>Listeria innocua 2
--------U-C-UGGUAGUU-AU-GGC-GAG-A-AGGU-CACAC-CCGUUC--CCAUCCCGAACACGGUAGUUAAG-CUUCUC-UGCG-CC-AAUGGUA-GU-UGGGGGCUU---CCCC-CUGCGAGAGUAG-GU-C-G-CUGCCG---G-GC---------
>Listeria ivanovii 1
--------U-C-UGGUAGUU-AU-GGC-GAG-A-AGGU-CACAC-CCGUUC--CCAUCCCGAACACGGUAGUUAAG-CUUCUC-UGCG-CC-AAUGGUA-GU-UGGGGGCUU---CCCC-CUGCGAGAGUAG-GU-C-G-CUGCCG---G-GC---------
>Listeria monocytogenes 2
--------U-C-UGGUAGUU-AU-GGC-GAG-A-AGGU-CACAC-CCGUUC--CCAUCCCGAACACGGUAGUUAAG-CUUCUC-UGCG-CC-AAUGGUA-GU-UGGGGGCUU---CCCC-CUGCGAGAGUAG-GU-C-G-CUGCCG---G-GC---------
>Listeria monocytogenes 3
------------UGGUAGUU-AU-GGC-GAG-A-AGGU-CACAC-CCGUUC--CCAUCCCGAACACGGUAGUUAAG-CUUCUC-UGCG-CC-AAUGGUA-GU-UGGGG-GCUU---CCC-CAGCGAGAGUAG-GU-C-G-CUGCCG---G-GCA--------
>Loofah witches'-broom phytoplasma 1
--------C-U-UGGUUAUU-AA--UA-AAA-G-GGGA-AACAC-CUGUUC--CCAUUCCGAAUACAGAAGUUAAG-UCCUUU--UACCUC-GACAAUA-GU-UGUUG-UUUA---CAU-CCGCAAAGAUAG-AG-U---UAGCCA---A-GG---------
>Mycoplasma capricolum 1
----------U-UGGUGGU--AU-AGC-AUA-G-AGGU-CACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUCUAU-UACG-GU-GAAGAUA-UU-AC----UGAU-------GUGAGAAAAUAG-CA-A-G-CUGCCA---G-UU---------
>Mycoplasma flocculare 1
-------CA-A-GAGUAACA-AU-AGC-AAA-A-GGGA-UCA-C-CUGAUA--CCAUUCCGAACUCAGUAGUUAAG-CCUUUU-UACG-CC-GAAAAUA-CU-A-----GAAA--------UAGGAAAAUAG-GA-A-G-UUACUC---U-UU---------
>Mycoplasma gallisepticum 1
--------U-G-UGAUAUCG-AU-AUC-GUG-A-UGGA-AACAC-CUGGUC--CCAUUCCGAACCCAGAAGUUAAG-CGUUAUCGGAG-CC-AAAGGUU-GC-------GCAA---------GCAAGAAUAGGGA-A-A-AUAUCA---C-GC---------
>Mycoplasma haemofelis 1
------GAC-U-UGGUGGUU-AU-GGC-GGA-G-UGAA-UGCAC-CCGAUC--CCAUCCCGAACUCGGCCGUGAAA-CGCUCC-AGCG-CU-GAUGGUA-CU-UCGCC-UCAA---GGC-ACGGGAGAGUAA-GU-C-G-CUGCCA---G-GUCU-------
>Mycoplasma genitalium 1
---------------UGCUA-AU-AUC-GCU-G-UGGA-AACAC-CUGGAA--CCAUCCCGAACCCAGCAGUUAAG-CACAGU-GGAG-CU-AAAUGUA-GG-UA----GUAA-------UACUGAGAAUAG-GU-A-A-GCACCA---A-G-C--------
>Mycoplasma mobile 1
--------A-C-AAGCAACU-AU-AGC-AA--G-AGUG-UACAC-CUGAAC--CCAUUCCGAACUCAGUAGUUAAG-CCUCUU-AGCG-UC-GAAGAUA-CC-A-----GUAA--------UGGGAAAAUAG-AG-C-G-UUGCUU---U-UU---------
>Mycoplasma mycoides 2
--------U-C-UGGUGGUU-AU-AGC-AUA-G-AGGU-CACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUCUAU-UACG-GU-GAAAAUA-UU-AC----UUAU-------GUGAGAAGAUAG-CA-A-G-CUGCCA---G-UUU--------
>Mycoplasma penetrans 1
------------CAGUGUUA-AU-AUU-GUA-G-UGGA-AACAC-CUGUUC--CCAUCCCGAACACAGAAGUUAAG-CACUAU-GAAG-CC-AAAGGUA-GC-------UUUU---------GCAAGAAUAG-GA-A-G-AUGCUG---C-UU---------
>Mycoplasma pulmonis 1
----------C-AAGUGACC-AU-AAC-G---C-AAGU-UAUAC-CUGAUA--CCAUUCCGAACUCAGUAGUCAAG-ACUUGU-GGUG-CC-GACGAUA-CC-C-----GCU---------GGGGAAAAUAG-GG-A-G-UUGCUU---U-UU---------
>Mycoplasma hyopneumoniae 1
--------A-A-GAGUAACA-AU-AGC-AAA-A-GGG--AUCAC-CUGAAU--CCAUUCCGAACUCAGUAGUUAAG-CCUUUU-UACG-CC-GAAGAUA-CU-A-----GAAA--------UAGGAAAAUAG-GG-A-G-UUACUC---U-U----------
>Mycoplasma gallisepticum 2
--------U-G-UGAUAUCG-AU-AUC-GUG-A-UGGA-AACAC-CUGGUC--CCAUUCCGAACCCAGAAGUUAAG-CAUCAU-GGAG-CC-AAAGGUA-GC-GCAA--GCAA----GA-AUAGGAAAAUAU-CA-C-G-CAAAGA---A-A----------
>Mycoplasma gallisepticum 3
--------U-G-UGAUAUCG-AU-AUC-GUG-A-UGGA-AACAC-CUGGUC--CCAUUCCGAACCCAGAAGUUAAG-CAUCAU-GGAG-CC-AAAGGUA-GC-GCAA--GCAA----GA-AUAGGAAAAUAU-CA-C-G-CCAACA---A-A----------
>Mycoplasma gallisepticum 4
--------U-G-UGAUAUCG-AU-AUC-GUG-A-UGGA-AACAC-CUGGUC--CCAUUCCGAACCCAGAAGUUAAG-CAUCAU-GGAG-CC-AAAGGUA-GC-GCAA--GCAA----GA-AUAGGAAAAUAU-CA-C-G-CCAACA---A-AA---------
>Mycoplasma hyopneumoniae 2
-------UA-A-GAGUAACA-AU-AGC-AAA-A-GGG--AUCAC-CUGAAU--CCAUUCCGAACUCAGUAGUUAAG-CCUUUU-UACG-CC-GAAGAUA-CU-A-----GAAA--------UAGGAAAAUAG-GG-A-G-UUACUC---U-UU---------
>Mycoplasma mycoides 1
--------U-C-UGGUGGU--AU-AGC-AUA-G-AGGU-CACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUCUAU-UACG-GU-GAAAAUA-UU-AC----UUAU-------GUGAGAAGAUAG-CA-A-G-CUGCCA---G-GU---------
>Mycoplasma mycoides 3
----------U-UGGUGGU--AU-AGC-AUA-G-AGGU-CACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUCUAU-UACG-GU-GAAAAUA-UU-AC----UUAU-------GUGAGAAGAUAG-CA-A-G-CUGCCA---G-UU---------
>Mycoplasma pneumoniae 1
--------U-U-UGGUGCCC-AU-GUC-GCU-G-UGGA-AACAC-CUGGUU--CCAUUUCGAACCCAGCAGUUAAG-CACAGU-GGAG-CC-GAAUGUA-GC-UG----UUU--------CAGUGAGAAUAG-GA-A-A-GCACCA---A-GC---------
>Mycoplasma sp. 1
--------U-C-UGGUGGUU-AU-AGC-AUA-G-AGGU-CACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUCUAU-UACG-GU-GAAGAUA-UU-AC----UUAU-------GUGAGAAAAUAG-CA-A-G-CUGCCA---G-UU---------
>Mycoplasma sp. 2
----------C-UGGUGGUU-AU-AGC-AUA-G-AGGU-CACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUCUAU-UACG-GU-GAAGAUA-UU-AC----UUAU-------GUGAGAAAAUAG-CA-A-G-CUGCCA---G-U----------
>Oceanobacillus iheyensis 1
--------U-C-UGGUAGCG-AU-AGC-GAA-G-AGGC-CACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-UGGGGCUUU---GCCC-CUGCAAGAGUAG-GA-C-G-CCGCCA---G-GC---------
>Oceanobacillus iheyensis 2
--------U-C-UGGUAGCG-AU-AGC-GAG-A-AGGU-CACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUUUUC-AGCG-CC-AAUGGUA-GU-UGGGGUUUU---ACCC-CUGCAAGAGUAG-GA-C-G-CCGCCA---G-GC---------
>Oceanobacillus iheyensis 3
--------U-C-UGGUAGCG-AU-AGC-GAA-G-AGGU-CACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-UGGGGCUUU---GCCC-CUGCAAGAGUAG-GA-C-G-CCGCCA---G-GC---------
>Oceanobacillus iheyensis 4
----------C-UGGUAGCG-AU-AGC-GAA-G-AGGU-CACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-UGGGGCUUU---GCCC-CUGCAAGAGUAG-GA-C-G-CCGCCA---G-GCA--------
>Oenococcus oeni 1
--------U-G-UCGUGUUA-AU-UCC-GAU-G-AGGU-CACAC-CUGUUC--CCAUUCCGAACACAGAAGUUAAG-CUUGUC-AGGG-CC-CAAAGUA-GU-UACAGGAACG--CCUG-UUGCAAGGUUAG-GA-C-G-ACGCGA---U-G----------
>Paenibacillus popilliae 1
--------U-U-UGGCGACU-AU-GGC-GGA-G-GGGU-UCCAC-GCGUUC--CCAUCUCGAACACGACCGUUAAG-CCCUCC-AGCG-CC-GAUGGUA-CU-UGGACCGCAG--GGUC-CUGGGAGAGCAG-GA-C-G-UUGCCA---A-GC---------
>Planococcus citreus 1
--------U-C-CAGUGAUG-AU-GGC-AAA-G-AGGC-CACAC-CCGUUC--CCAUGCCGAACACGGAAGUUAAG-CUCUUU-UGCG-CC-GAUGGUA-GU-UGGGGGUUU---CCCC-CUGUGAGAGUAG-GA-C-G-UCGCUG---G-GC---------
>Planococcus kocurii 1
--------U-C-CAGUGAUG-AU-GGC-AAA-G-AGGC-CACAC-CCGUUC--CCAUCCCGAACACGGCAGUUAAG-CUCUUU-UGCG-CC-GAUGGUA-GU-UGGGGGUUU---CCCC-CUGUGAGAGUAG-GA-C-G-UCGCUG---G-GC---------
>Spiroplasma melliferum 1
--------U-C-UGGUGCUU-AU-GGC-AUA-G-UGGA-CACAC-CCGUUC--CCAUCCCGAACACGGAAGUUAAG-CACUAU-UACG-CC-GACGAUA-GC-C-----GCAA--------GGUGAAAAUAG-GG-C-A-GUGCCA---G-GU---------
>Sporolactobacillus inulinus 1
--------C-U-UGGCGGUC-AU-AGC-GAA-G-AGGU-CACAC-CCGUUC--CCAUCCCGAACACGGUCGUUAAG-CUCUUC-UGUG-CC-GAAGGUA-AU-UGGGGGCUGU--CCCC-CUGUGAGAGUAG-GU-C-A-CUGCCA---G-GC---------
>Sporosarcina ureae 1
--------U-U-UAGUAACG-AU-AGC-GAA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUUC-AGCG-CU-GAUGGUA-GU-UGGGGGUUU---CCCC-CUGUGAGAGUAA-GA-C-G-UUGCUA---G-GC---------
>Staphylococcus aureus 1
--------U-C-UGGUGACU-AU-AGC-AAG-G-AGGU-CACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUCCUU-AGCG-UC-GAUGGUA-GU-CGAAC-UUAC---GUU-CCGCUAGAGUAG-AA-C-G-UUGCCA---G-GC---------
>Staphylococcus epidermidis 3
--------U-C-UGGUGAUA-AU-GGC-AAG-G-AGGU-CACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUCCUU-AGCG-CC-GAUGGUA-GU-CGGAC-UUAC---GUU-CCGCUAGAGUAG-GA-C-G-UUGCCA---G-GC---------
>Streptococcus salivarius 1
--------U-U-AAGUGACG-AU-AGC-CUA-G-GAGA-UACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CCCUAG-UACG-CC-UGAUGUA-GU-UGGGGGUUGC---CCC-CUGUUAGAUACG-GU-A-G-UCGCUU---A-GC---------
>Thermoactinomyces vulgaris 1
--------U-C-UGGUGACC-AU-AGC-GGA-G-GGGA-UCCAC-CCGUUC--CCAUCCCGAACACGGAAGUUAAG-CCCUCC-AGCG-CC-GAUGGUA-CU-UGGGG-AUGA---CCC-CUGGGAGAGUAG-GU-C-G-UUGCCA---G-GC---------
>Sporolactobacillus nakayamae 1
--------C-U-UGGCGGUC-AU-AGC-GAA-GAGGGU-CACAC-CCGUUC--CCAUCCCGAACACGGUCGUUAAG-CUCUUC-UGUG-CC-GAUGGUA-AU-UGGGGGCUGU--CCCC-CUGUGAGAGUAG-GU-C-A-CUGCCA---G-GC---------
>Sporosarcina pasteurii 1
--------U-U-UGGUGGCG-AU-AGC-GAA-G-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-GU-UGGGGUGUUA--GCCC-CUGCAAGAGUAG-GA-C-G-UUGCCA---G-GC---------
>Staphylococcus aureus 2
--------U-C-UGGUGGCU-AU-AGC-AAG-G-AGGU-CACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUCCUU-AGCG-UC-GAUGGUA-GU-CGAAC-UUAC---GUU-CCGCUAGAGUAG-AA-C-G-UUGCCA---G-GC---------
>Staphylococcus aureus 3
--------U-C-UGGUGAAU-AU-AGC-AAG-G-AGGU-CACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUCCUU-AGCG-UC-GAUGGUA-GU-CGAAC-UUAC---GUU-CCGCUAGAGUAG-AA-C-G-UUGCCA---G-GC---------
>Staphylococcus epidermidis 1
--------U-C-UGGUGACA-AU-GGC-AAG-G-AGGU-CACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUCCUU-AGCG-CC-GAUGGUA-GU-CGGAC-UGAC---GUU-CCGCUAGAGUAG-GA-C-G-UUGCCA---G-GC---------
>Staphylococcus epidermidis 2
--------U-C-UGGUGACA-AU-GGC-AAG-G-AGGU-CACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUCCUU-AGCG-CC-GAUGGUA-GU-CGGAC-UGAC---GUU-ACGCUAGAGUAG-GA-C-G-UUGCCA---G-GC---------
>Staphylococcus haemolyticus 1
--------U-C-UGGUGACA-AU-GGC-AAG-G-AGGU-CACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CUCCUU-AGCG-CC-GAUGGUA-GU-UGGAU-UUAC---GUU-CCGCUAGAGUAG-GA-C-G-UUGCCA---G-GC---------
>Staphylococcus haemolyticus 2
--------U-C-UGGUGACA-AU-GGC-AAG-G-AGGU-CACAC-CUGUUC--UCAUGCCGAACACAGAAGUUAAG-CUCCUU-AGCG-CC-GAUGGUA-GU-UGGAU-UUAC---GUU-CCGCUAGAGUAG-GA-C-G-UUGCCA---G-GC---------
>Streptococcus agalactiae 1
--------U-U-AAGUGAUA-AU-UGC-CUA-G-GAGA-UACAC-CUGUUC--UCAUGCCGAACACAGAAGUUAAG-CCCUAG-AACG-CC-GGAAGUA-GU-UGGGGGUUG---CCCC-CUGUGAGAUAAG-GU-A-G-UCGCUU---A-GC---------
>Streptococcus agalactiae 2
--------U-U-AAGUGAUA-AU-UGC-CUA-G-GAGA-UACAC-CUGUUC--UCAUGCCGAACACAGAAGUUAAG-CCCUAG-AACG-CC-GGAAGUA-GU-UGGGGGUUG---CCCC-CUGUGAGAUAAG-GU-A-G-UCGCUU---A-GC---------
>Streptococcus mutans 1
--------U-U-AAGUGAUG-AU-AGC-CUA-G-GGGA-GACAC-CUGUAU--CCAUGCCGAACACAGCAGUUAAG-CCCUAG-CACG-CC-UGAAGUA-GU-UGGGGGUUG---CCCC-CUGUGAGAUAGG-GU-C-G-UCGCUU---A-GC---------
>Streptococcus mutans 2
--------U-U-AAGUGAUG-AU-AGC-CUA-G-GGGA-GACAC-CUGUAU--CCAUGCCGAACACAGCAGUUAAG-CCCUAG-CACG-CC-UGAAGUA-GU-UGGGGGUUG---CCCC-CUGUGAGAUAGG-GU-C-G-UCGCUU---G-GC---------
>Streptococcus mutans 3
--------U-U-AAGUGAUG-AU-AGC-CUA-G-GGGA-GACAC-CUGUAC--CCAUGCCGAACACAGCAGUUAAG-CCCUAG-CACG-CC-UGAAGUA-GU-UGGGGGUUG---CCCC-CUGUGAGAUAGG-GU-C-G-UCGCUU---A-GC---------
>Streptococcus pneumoniae 1
----------U-AAGUGACG-AU-AGC-CUA-G-GAGA-UACAC-CUGUAC--CCAUGCCGAACACAGAAGUUAAG-CCCUAG-AACG-CC-GGAAGUA-GU-UGGGGGUUG---CCCC-CUGUGAGAUAGG-GA-A-G-UCGCUU---A-GC---------
>Streptococcus pneumoniae 2
--------U-U-AAGUGACG-AU-AGC-CUA-G-GAGA-UACAC-CUGUAC--CCAUGCCGAACACAGAAGUUAAG-CCCUAG-AACG-CC-GGAAGUA-GU-UGGGGGUUG---CCCC-CUGUGAGAUAGG-GA-A-G-UCGCUU---A-GC---------
>Streptococcus pyogenes 1
--------U-U-AAGUGACG-AU-AGC-CUA-G-GAGA-UACAC-CUGUAC--CCAUGCCGAACACAGCAGUUAAG-CCCUAG-AAUG-CC-UGAUGUA-GU-UGGGGGUUG---CCCC-CUGUGAGAUAAG-GU-A-G-UCGCUU---A-GC---------
>Streptococcus pyogenes 2
--------U-U-AAGUGACG-AU-AGC-CUA-G-GAGA-UACAC-CUGUAC--CCAUGCCGAACACAGCAGUUAAG-CCCUAG-AACG-CC-UGAUGUA-GU-UGGGGGUUG---CUCC-CUGUGAGAUAAG-GU-A-G-UCGCUU---A-GC---------
>Streptococcus pyogenes 3
--------U-U-AAGUGACG-AU-AGC-CUA-G-GAGA-UACAC-CUGUAC--CCAUGCCGAACACAGCAGUUAAG-CCCUAG-AACG-CC-UGAUGUA-GU-UGGGGGUUG---CCCC-CUGUGAGAUAAG-GU-A-G-UCGCUU---A-GC---------
>Streptococcus pyogenes 4
--------U-U-AAGUGACG-AU-AGC-CUA-G-GAGA-UACAC-CUGUAC--CCAUGCCGAACACAGCAGUUAAG-CCCUAG-AACG-CC-UGAUGUA-GU-UGGGGGUUG---CCCC-CUGUGAGAUAAG-GU-A-G-UCGCUU---A-GC---------
>Streptococcus thermophilus 1
--------U-U-AAGUGACG-AU-AGC-CUA-G-GAGA-UACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CCCUAG-UACG-CC-UGAUGUA-GU-UGGGGGUUG---CCCC-CUGUUAGAUACG-GU-A-G-UCGCUU---A-GC---------
>Streptococcus thermophilus 2
--------U-U-AAGUGACG-AU-AGC-CUA-G-GAGA-UACAC-CUGUUC--CCAUGCCGAACACAGAAGUUAAG-CCCUAG-UACG-CC-UGAUGUA-GU-UGGGGGUUG---CCCC-CUGUUAGAUACG-GU-A-G-UCGCUU---A-GC---------
>Ureaplasma parvum 1
------------UAGUGAUU-AU-AUC-AGA-G-UGGA-AAUAC-CUGUUC--CCAUCCCGAACACAGAAGUCAAG-CACUCU-AGAG-CC-GAAAAUA-GC-------GCAA---------GU-AAAAUAG-GU-C-A-UCGCUA---C-GC---------
>Ureaplasma parvum 2
------------UAGUGAUU-AU-AUC-AGA-G-UGGA-AAUAC-CUGUUC--CCAUCCCGAACACAGAAGUCAAG-CACUCU-AGAG-CC-GAAAAUA-GC-------GCAA---------GU-AAAAUAG-GU-C-A-UCGCUA---C-GC---------
>Ureaplasma parvum 3
--------U-G-UAGUGAUU-AU-AUC-AGA-G-UGGA-AAUAC-CUGUUC--CCAUCCCGAACACAGAAGUCAAG-CACUCU-AGAG-CC-GAAAAUA-GC-------GCAA---------GU-AAAAUAG-GU-C-A-UCGCUA---C-GC---------
>Ureaplasma urealyticum 2
--------U-G-UAGUGAUC-AU-AUC-AGA-G-UGGA-AAUAC-CUGUUC--CCAUCCCGAACACAGAAGUCAAG-CACUCU-AGAG-CC-GAAAAUA-GC-------GCAA---------GU-AAAAUAG-GU-C-A-UCGCUA---C-GC---------
>Ureaplasma urealyticum 3
--------U-G-UAGUGAUC-AU-AUC-AGA-G-UGGA-AAUAC-CUGUUC--CCAUCCCGAACACAGAAGUCAAG-CACUCU-AGAG-CC-AAAAAUA-GC-------GUAA---------GU-AAAAUAG-GU-C-A-UCGCUA---C-GC---------
>Ureaplasma urealyticum 1
--------U-G-UAGUGAUC-AU-AUC-AGA-G-UGGA-AAUAC-CUGUUC--CCAUCCCGAACACAGAAGUCAAG-CACUCU-AGAG-CC-GAAAAUA-GC-------GCAA---------GU-AAAAUAG-GU-C-A-UCGCUA---C-GC---------
>Weissella viridescens 1
--------U-G-UUGUGAUG-AU-GGC-AUU-G-AGGC-CACAC-CUGUUC--CCAUACCGAACACAGAAGUUAAG-CUCAAU-AGCA-CC-GAAAGUA-GU-UGGAGGAUCU--CUUC-CUGCGAGGAUAG-GA-C-G-UCGCGA---U-GC---------
>Weissella viridescens 2
--------U-G-UUGUGAUG-AU-GGC-AUU-G-AGGU-CACAC-CUGUUC--CCAUACCGAACACAGAAGUUAAG-CUCAAU-AGCG-CC-GAAAGUA-GU-UGGAGGAUCU--CUUC-CUGCGAGGAUAG-GA-C-G-UCGCAA---U-GC---------
>Fusobacterium mortiferum 1
--------C-U-UGGUGAGA-AG-AGC-UAC-G-GGGG-UACAC-CCAGAA--ACAUUCCGAACCUGGAAGUUAAG-CCCGUA-AACG-CU-GAAAGUA-CU-UGGAGGGAAG--CCUC-CUGGGAGGAUAG-GA-A-C-UUGCCA---A-GU---------
>Fusobacterium mortiferum 2
--------C-U-UGGUAAGA-AU-AGC-UGC-G-GGGG-UACAC-CUGGUC--CCAUUCCGAACCCAGAAGUUAAG-CCCGUA-AACG-CU-GAAAGUA-CU-UGGAGGGAAG--CCUC-CUGGGAGGAUAG-GA-A-C-UUGCCA---A-GU---------
>Fusobacterium nucleatum 3
--------C-U-UGGUGAGU-AU-AGC-UAU-G-GGGG-UACAC-CUAGUU--ACAUUCCGAACCUAGAAGUUAAG-CCCAUA-UACG-CU-GAUGGUA-CU-UGGCUGGAAG--CGGC-CUGGGAGAGUAU-GG-A-U-UUGCCA---A-GC---------
>Fusobacterium nucleatum 1
--------C-U-UGGUGAGU-AU-AGC-UAU-G-GGGG-UACAC-CUAGUU--ACAUUCCGAACCUAGAAGUUAAG-CCCAUA-UACG-CU-GAUGGUA-CU-UGGCUGGAAG--CGGC-CUGGGAGAGUAU-GG-A-U-UUGCCA---A-G----------
>Fusobacterium nucleatum 2
--------C-U-UGGUGAGU-AU-AGC-UAU-G-GGGG-UACAC-CUAGUU--ACAUUCCGAACCUAGAAGUUAAG-CCCAUA-UACG-CU-GAUGGUA-CU-UGGCUGGAAG--UGGC-CUGGGAGAGUAU-GG-A-U-UUGCCA---A-G----------
>Fusobacterium nucleatum 4
----------U-UGGUGAGU-AU-AGC-UAU-G-GGGG-UACAC-CUAGUU--ACAUUCCGAACCUAGAAGUUAAG-CCCAUA-UACG-CU-GAUGGUA-CU-UGGCUGGAAG--CGGC-CUGGGAGAGUAU-GG-A-U-UUGCCA---A-GC---------
>Fusobacterium nucleatum 5
----------U-UGGUGAGU-AU-AGC-UAU-G-GGGG-UACAC-CUAGUU--ACAUUCCGAACCUAGAAGUUAAG-CCCAUA-UACG-CU-GAUGGUA-CU-UGGCUGGAAG--CGGC-CAGGGAGAGUAU-GG-A-U-UUGCCA---A-GC---------
>Fusobacterium varium 1
--------C-U-UGGUAAGA-AU-AGC-UGC-G-GGGG-UACAC-CUGGUC--CCAUUCCGAACCCAGAAGUUAAG-CCCGUA-AACG-CU-GAAAGUA-CU-UGGAGGGAAG--CCUC-CUGGGAGGAUAG-GA-A-C-UUGCCA---A-GC---------
>Rhodopirellula baltica 1
-------UU-C-CGGCGAUC-AU-AUC-UUA-A-AGGU-UAUAC-CUGUUC--CCAUUCCGAACACAGCAGUCAAG-CUUUAA--GAG-CC-GAUGAUA-GU-GC----CCACCA-----GCGUGAAAGUAG-GU---C-UUGCCG---G-AU---------
>Gemm_obscu::B
-------UU-C-CGGUGACC-AU-ACC-CAA-A-CGGA-AACAC-CCGUUC--CCAUUCCGAACACGGCCGUGAAA-CGUUUG-AGG--CC-GAUGGUA-GU-GC----GUCCA------GCGCGAGAGUAG-GU---A-UCGCCG---G-CC---------
>Planctomyces brasiliensis 1
-------UU-C-UGGUGACU-UU-ACG-UCU-G-GGGA-AACAC-UCGUUC--CCAUUCCGAACACGACAGUUAAG-CCCUGA--CGG-CC-GAUGAUA-GU-AC----UGCAA------GUGUGAAAGUAG-GU-G-A-UUGCCA---G-AC---------
>Planctomyces limnophilus 1
-------UU-C-CGGUGACU-UU-ACG-CGU-G-AGGA-AACAC-UCGUUC--CCAUUCCGAACACGACAGUUAAG-CUCCCG--CGG-CC-GAUGAUA-GU-GC----CCACCA-----GCGUGAAAGUAG-GU-U-A-UCGCCG---G-AC---------
>Pirellula sp. 1
-------UU-C-CGGUGACC-AU-AUG-GUU-G-UGGA-AACAC-CUGUUC--CCUUUCCGAACACAGCAGUUAAG-CACAAC--CAG-CC-GAUGAUA-GU-GC----CCACCA-----GUGCGAAAGUAG-GU---A-UCGCCG---G-AUC--------
>Pirellula sp. 2
-------UU-C-CGGCGAUC-AU-AUC-UUA-A-AGGU-UAUAC-CUGUUC--CCAUUCCGAACACAGCAGUCAAG-CUUUAA--GAG-CC-GAUGAUA-GU-GC----CCACCA-----GCGUGAAAGUAG-GU---C-UUGCCG---G-AUC--------
>Blastopirellula marina 1
-------UU-C-CGGUGACC-AU-AUC-GAA-A-AGGU-CAUAC-CUGUUC--CCAUUCCGAACACAGCCGUCAAG-CUUUUC--GAG-CC-GAUGAUA-GU-AC----CACAA------GUGUGAAAGUAG-GU---A-UCGCCG---G-AUC--------
>Isosphaera pallida 1
-------CU-C-CGGUGACC-AU-ACC-GUC-G-GGGU-CCUAC-CCGUUC--CCAUUCCGAACACGGCCGUCAAG-CCCGCC--GGG-CC-UAUGAUA-GU-GC----GUCA-------GCGCGAAAGUCG-GU-G-A-UCGCCG---G-AUCU-------
>Acetobacter aceti 1
-----RGAC-C-UGGUGGCU-AU-GGC-GGG-A-GAGA-UCCAC-CCGAUC--CCAUCCCGAACUCGGCCGUGAAA-ACCCCC-AGCG-CC-UAUGAUA-CU-GCGGC-UUAA---GCC-GUGGGAAAGUCG-GU-C-G-CCGCCA---G-GUCU-------
>Acetobacter aceti 2
-----GGAC-C-UGGUGGCU-AU-GGC-GGG-A-GAGA-UCCAC-CCGAUC--CCAUCCCGAACUCGGCCGUGAAA-ACCCCC-AGCG-CC-UAUGAUA-CU-GCGGC-UUAA---GCC-GUGGGAAAGUCG-GU-C-G-CCGCCA---G-GUCC-------
>Acetobacter pasteurianus 1
-----RRAC-C-UGGUGGCC-AU-GGC-GGG-A-GAGA-UCCAC-CCGAUC--CCAUCCCGAACUCGGCCGUGAAA-ACCCCC-AGCG-CC-UAUGAUA-CG-UUGGC-UUAA---GCC-ACGGGAAAGUCG-GU-C-G-CCGCCA---G-GUCU-------
>Acetobacter sp. 2
-----NGAU-C-UGAUGACC-AU-GGC-GGGAG-CA-A-AUCAC-CCGAUC--CCAUCCCGAACUCGGCCGUCAAA-UGCCCC-AGCG-CC-CAUGAUA-CU-CUGCC-UCAA---GGC-ACGGAAAAGUCG-GU-C-G-CCGCCA---G-AUCY-------
>Acetobacter sp. 3
-----NGAU-C-UGGUGGUC-AU-AGC-GGGAG-UA-A-AUCAC-CCGAUC--CCAUCCCGAACUCGGCCGUCAAA-UGCCUC-AGCG-CC-CAUGAUA-CU-CUGCC-UCAA---GGC-ACGGAAAAGUCG-GU-C-G-CCGCCA---G-ACCC-------
>Acetobacter sp. 4
-----NGAU-C-UGGUGGCC-AU-GGC-GGCAG-CA-A-AUCAC-CCGAUC--CCAUGCCGAACUCGGCCGUCAAA-UGCCCC-AGCG-CC-CAUGAUA-CU-CUGCC-UCAA---GGC-ACGGAAAAGUCG-GU-C-G-CCGCCA---G-AUCY-------
>Acetobacter sp. 5
------NNU-C-UGAUGGCC-AU-GGC-GGGAG-CA-A-AUCAC-CCGAUC--CCAUCCCGAACUCGGCCGUCAAA-UGCCCC-AGCG-CC-CAUGAUA-CU-CUGCC-UCAA---GGC-ACGGAAAAGUCG-GU-C-G-CCGCCA---G-AUC--------
>Acetobacter sp. 6
------GAU-C-UGGUGGCC-AU-GGC-GGGAG-CA-A-AUCAG-CCGAUC--CCAUCCCGAACUCGGCCGUCAAA-UGCCCC-AGCG-CC-CAUGAUA-CU-CUGCC-UCAA---GGC-ACGGAAAAGUCG-GU-C-G-CCGCCA---G-AYY--------
>Acetobacter sp. 7
-----NGAU-C-UGAUGGCC-AU-GGC-GGGAG-CA-A-AUCAC-CCGAUC--CCAUCCCGAACUCGGCCGUCAAA-UGCCCC-AGCG-CC-CAUGAUA-CU-CUGCC-UCAA---GGC-ACGGAAAAGUCG-GU-C-G-CCGCCA---G-AUCY-------
>Acidomonas methanolica 1
-----NGAU-C-UGGUGGCC-AU-GGC-GGGAG-CA-A-AUCAG-CCGAUC--CCAUCCCGAACUCGGCCGUCAAA-UGCCCC-AGCG-CC-CAUGAUA-CU-CUGCC-UCAA---GGC-ACGGAAAAGUCG-GU-C-G-CCGCCA---G-AUCY-------
>Acidiphilium acidophilum 1
-----CGAC-C-UGGUGGCC-AU-UGC-GGG-G-GGCC-CGCAC-CCGAUC--CCAUCCCGAACUCGGCCGUGAAA-ACCCCC-AGCG-CC-CAUGGUA-CU-GUGCC-UCAA---GGC-ACGGGAGAGUAG-GU-C-G-CCGCCA---G-GUCC-------
>Acidiphilium cryptum 1
-----CGAC-C-UGGUGGCC-AU-UGC-GGG-G-AGCC-UGCAC-CCGAUC--CCAUCCCGAACUCGGCCGUGAAA-AUCCCC-AGCG-CC-CAUGGUA-CU-GUGCC-UCAA---GGC-ACGGGAGAGUAG-GU-C-G-CCGCCA---G-GUCCUC-----
>Agrobacterium tumefaciens 6
-----CGAC-C-UGGUGGUC-AU-CGC-GGG-G-CGGC-UGCAC-CCGUUC--CCUUUCCGAACACGGCCGUGAAA-CGCCCC-AGCG-CC-AAUGGUA-CU-UCGUC-UCAA---GAC-GCGGGAGAGUAG-GU-C-G-CUGCCA---G-GUCU-------
>Agrobacterium vitis 1
------GAC-C-UGGUGGUC-AU-GGC-GGG-G-CGGC-CGCAC-CCGUUC--CCAUUCCGAACACGGCCGUGAAA-CGCCCC-UGCG-CC-AAUGGUA-CU-UCGUC-UUAA---GAC-GCGGGAGAGUAG-GU-C-G-CUGCCA---G-GUCU-------
>Ancylobacter aquaticus 1
--------C-C-UGGUGGCC-AU-UGC-GAG-G-AGCC-CCAAC-CCGAUC--CCAUCCCGAACUCGGCCGUUAAA-CUCCUC-AGCG-CC-GAUGGUA-CU-AUGUC-UCAA---GAC-CUGGGAGAGUAG-GU-C-G-CUGCCA---G-GCCU-------
>Azospirillum lipoferum 1
-------CU-AGUGAUGAGU-AU-GGC-AAA-G-AGGU-CA-AC-CCGUU---CCAUACCGAACACGGAAGUUAAG-CUCUUU-AGCG-CC-GAUGGUA-GU-UGGGGGCUU---CCCC-CUGUGAGAGUAG-GA-C-G-UCGCUA---G-G----------
>Bartonella bacilliformis 1
------GAC-U-UGGUGGUU-AU-GGC-GGA-A-CGCC-UGCAC-CCGAUC--CCAUCCCGAACUCGGCCGUGAAA-CGUUCC-AGCG-CU-GAUGGUA-CU-UUGUC-UUAA---GGC-ACGGGAGAGUAA-GU-C-G-CUGCCA---G-GUCU-------
>Bartonella henselae 2
------GAC-U-UGGUGGUU-AU-GGC-GGA-G-UGAA-CGCAC-CCGAUC--CCAUCCCGAACUCGGCCGUGAAA-CGCUCC-AGCG-CU-GAUGGUA-CU-UUGCC-UCAA---GGC-ACGGCAGAGUAA-GU-C-G-UUGCCA---G-GUCU-------
>Bartonella quintana 2
------GAC-U-UGGUGGUU-AU-GGC-GGA-G-CGAA-CGCAC-CCGAUC--CCAUCCCGAACUCGGCCGUGAAA-CGUUCC-AGCG-CU-GAUGGUA-CU-UUGCC-UCAA---GGC-ACGGCAGAGUAA-GU-C-G-UUGCCA---G-GUCU-------
>Bradyrhizobium japonicum 1
------GGC-C-UGGUGGUU-UU-AGC-GAA-G-AGCC-UCAAC-CCGAUC--CCAUCCCGAACUCGGCCGUUAAA-CUCUUC-AGCG-CC-AAUGGUA-CU-AUGGC-UUAA---GCC-CUGGGAGAGUAG-GU-C-G-CUGCCA---G-GCCU-------
>Brucella melitensis 2
------GAC-C-UGGUGGUU-AU-GGC-GGA-G-CGGC-UGCAC-CCGAUC--CCAUUCCGAACUCGGCCGUGAAA-CGCUCC-AGCG-CC-AAUGGUA-CU-UCGUC-UCAA---GAG-GAGGCAGAGUAG-GU-C-G-AUGCCA---G-GUCU-------
>Caulobacter crescentus 1
-----CGAC-C-UGGUGGCU-AU-GCC-GGG-G-GUUA-CCCAC-CCGAUC--CCAUUCCGAACUCGGUCGUUAAG-UCCCCC-UGGG-CC-AAUGGUA-CU-UCGUC-UCAA---GGC-GCGGGAGAGUAG-GU-C-G-CCGCCA---G-GCC--------
>Caulobacter sp. 1
------GAC-C-UGGUGGCU-AU-GUC-GGU-G-GUUC-CCCAC-CCGAUC--CCAUUCCGAACUCGGUCGUUAAG-CCCUCC-AGAG-CC-GAUGGUA-CU-UCGUC-UUAA---GGC-GCGGGAGAGUAG-GU-C-G-CCGCCG---G-GUCU-------
>Caulobacter sp. 2
------GAC-C-CGGCGGCU-AU-GUC-GGA-G-GUUC-CCCAC-CCGAUC--CCAUUCCGAACUCGGUCGUUAAG-CCCUCC-AGAG-CC-AAUGGUA-CU-UCGUC-UCAA---GGC-GCGGGAGAGUAG-GU-C-G-CCGCCG---G-GCCU-------
>Caulobacter sp. 3
------GAC-C-UGGUGGCU-AU-GUC-GGA-G-GUUC-CCCAC-CCGAUC--CCAUUCCGAACUCGGUCGUUAAG-CCCUCC-AGAG-CC-GAUGGUA-CU-UCGUC-UUAA---GGC-GCGGGAGAGUAG-GU-C-G-CCGCCG---G-GUCU-------
>Caulobacter sp. 5
------GAC-C-CGGUGGCU-AU-GUC-GGA-G-GUUC-CCUAC-CCGAUC--CCAUUCCGAACUCGGUCGUUAAA-GCCUCC-AGAG-CC-GAUGGUA-CU-UCGUC-UUAA---GUC-GCGGGAGAGUAG-GU-C-G-CCGCCG---G-GUCU-------
>Caulobacter sp. 6
------GAC-C-UGGCGGCU-AU-GCC-GGG-G-GUUC-CCCAC-CCGAUC--CCAUUCCGAACUCGGUCGUUAAG-CCCUCC-UGGG-CC-AAUGGUA-CU-UCGUC-UUAA---GGC-GCGGGAGAGUAG-GU-C-G-CCGCCA---G-GCCC-------
>Caulobacter sp. 7
------GAC-C-CGGCGGCU-AU-GUC-GGA-G-GUUC-CCCAC-CCGAUC--CCAUUCCGAACUCGGUCGUUAAG-CCCUCC-AGAG-CC-GAUGGUA-CU-UCGUC-UUAA---GGC-GCGGGAGAGUAG-GU-C-G-CCGCCG---G-GCCC-------
>Acetobacter sp. 1
------GAU-C-UGGUGGCC-AU-GGC-GGG-G-CGCA-AUCAC-CCGAUC--CCAUCCCGAACUCGGCCGUCAAA-UGCCCC-AGCG-CC-CAUGAUA-CU-CUGCC-UCAA---GGC-ACGGAAAAGUCG-GU-C-G-CCGCCA---G-AUCC-------
>Agrobacterium tumefaciens 1
------GAC-C-UGGUGGUU-AU-CGC-GGG-G-CGGC-UGCAC-CCGUUC--CCAUUCCGAACACGGCCGUGAAA-CGCCCC-AGCG-CC-AAUGGUA-CU-CCGUC-UCAA---GAC-GCGGGAGAGUAG-GU-C-G-CUGCCA---G-GUCUGCAAAAC
>Agrobacterium tumefaciens 2
------GAC-C-UGGUGGUU-AU-CGC-GGG-G-CGGC-UGCAC-CCGUUC--CCAUUCCGAACACGGCCGUGAAA-CGCCCC-AGCG-CC-AAUGGUA-CU-CCGUC-UCAA---GAC-GCGGGAGAGUAG-GU-C-G-CUGCCA---G-GUC--------
>Agrobacterium tumefaciens 3
------GAC-C-UGGUGGUU-AU-CGC-GGG-G-CGGC-UGCAC-CCGUUC--CCAUUCCGAACACGGCCGUGAAA-CGCCCC-AGCG-CC-AAUGGUA-CU-UCGUC-UCAA---GAC-GCGGGAGAGUAG-GU-C-G-CUGCCA---G-GUC--------
>Agrobacterium tumefaciens 4
------GAC-C-UGGUGGUU-AU-CGC-GGG-G-CGGC-UGCAC-CCGUUC--CCAUUCCGAACACGGCCGUGAAA-CGCCCC-AGCG-CC-AAUGGUA-CU-CCGUC-UCAA---GAC-GCGGGAGAGUAG-GU-C-G-CUGCCA---G-GUCUGCA----
>Agrobacterium tumefaciens 7
------GAC-C-UGGUGGUU-AU-CGC-GGG-G-CGGC-UGCAC-CCGUUC--CCUUUCCGAACACGGCCGUGAAA-CGCCCC-AGCG-CC-AAUGGUA-CU-UCGUC-UCAA---GAC-GCGGGAGAGUAG-GU-C-G-CUGCCA---G-GUCUGCAAAAC
>Agrobacterium tumefaciens 8
------GAC-C-UGGUGGUU-AU-CGC-GGG-G-CGGC-UGCAC-CCGUUC--CCUUUCCGAACACGGCCG-GAAA-CGCCCC-AGCG-CC-AAUGGUA-CU-UCGUC-UCAA---GAC-GCGGGAGAGUAG-GU-C-G-CUGCCA---G-GUCUGCAAAAC
>Anaplasma marginale 1
------UGG-C-UGGUGGUU-AU-GGC-GGG-A-GUGA-AACAC-CCGGUA--ACAUCCCGAACCCGGAAGUUAAG-CCUCCC-AGCG-CC-UGUGGUA-CU-UUGUC-UUAA---GAC-ACGGGAGAGAGG-GU-C-G-CUGCCA---G-CCUU-------
>Anaplasma phagocytophilum 1
------GG--C-UGGUGGUA-AU-GGC-AGG-A-GUGA-AACAC-CCGGUA--ACAUUCCGAACCCGGAAGUUAAG-CCUCCU-AGCG-CC-UGUGGUA-CU-UUGUC-UUAA---GAC-AUGGGAGAGAGG-GU-C-G-CUGCCA---G-CCAA-------
>Brucella abortus 1
------GAC-C-UGGUGGUU-AU-GGC-GGA-G-CGGC-UGCAC-CCGAUC--CCAUUCCGAACUCGGCCGUGAAA-CGCUCC-AGCG-CC-AAUGGUA-CU-UCGUC-UCAA---GAC-GCGGGAGAGUAG-GU-C-G-CUGCCA---G-GUCU-------
>Bartonella henselae 1
------GAC-U-UGGUGGUU-AU-GGC-GGA-G-UGAA-CGCAC-CCGAUC--CCAUCCCGAACUCGGCCGUGAAA-CGCUCC-AGCG-CU-GAUGGUA-CU-UUGCC-UUAA---GGC-ACGGGAGAGUAA-GU-C-G-CUGCCA---G-GUCU-------
>Bartonella quintana 1
------GAC-U-UGGUGGUU-AU-GGC-GGA-G-CGAA-CGCAC-CCGAUC--CCAUCCCGAACUCGGCCGUGAAA-CGUUCC-AGCG-CU-GAUGGUA-CU-UUGCC-UUAA---GGC-ACGGGAGAGUAA-GU-C-G-CUGCCA---G-GUCU-------
>Brucella melitensis 1
------GAC-C-UGGUGGUU-AU-GGC-GGA-G-CGGC-UGCAC-CCGAUC--CCAUUCCGAACUCGGCCGUGAAA-CGCUCC-AGCG-CC-AAUGGUA-CU-UCGUC-UCAA---GAC-GCGGGAGAGUAG-GU-C-G-CUGCCA---G-GUC--------
>Brucella melitensis 3
------GAC-C-UGGUGGUU-AU-GGC-GGA-G-CGGC-UGCAC-CCGAUC--CCAUUCCGAACUCGGCCGUGAAA-CGCUCC-AGCG-CC-AAUGGUA-CU-UCGUC-UCAA---GAC-GCGGGAGAGUAG-GU-C-G-CUGCCA---G-GUCU-------
>Brucella suis 1
------GAC-C-UGGUGGUU-AU-GGC-GGA-G-CGGC-UGCAC-CCGAUC--CCAUUCCGAACUCGGCCGUGAAA-CGCUCC-AGCG-CC-AAUGGUA-CU-UCGUC-UCAA---GAC-GCGGGAGAGUAG-GU-C-G-CUGCCA---G-GUCUGCAAAG-
>Brucella suis 2
------GAC-C-UGGUGGUU-AU-GGC-GGA-G-CGGC-UGCAC-CCGAUC--CCAUUCCGAACUCGGCCGUGAAA-CGCUCC-AGCG-CC-AAUGGUA-CU-UCGUC-UCAA---GAC-GCGGGAGAGUAG-GU-C-G-CUGCCA---G-GUCU-------
>Candidatus Pelagibacter ubique 1
------UCG-C-CGGUGAUU-AU-UGC-GAA-G-GGGU-UAUAC-CCGAUC--CCAUUCCGAACUCGGAAGUCAAG-CCCUUC-AGCG-CC-AAUGGUA-CU-UUGUC-UUAA---GAC-ACGGAAGAGUAG-GA-C-A-UUGCCG---G-CUAU-------
>Caulobacter crescentus 2
------GAC-C-UGGUGGCU-AU-GCC-GGG-G-GUUC-CCCAC-CCGAUC--CCAUUCCGAACUCGGUCGUUAAG-UCCCCC-UGGG-CC-AAUGGUA-CU-UCGUC-UCAA---GGC-GCGGGAGAGUAG-GU-C-G-CCGCCA---G-G----------
>Caulobacter spinosum 1
-----CGAC-C-UGGUGGCU-AU-GCC-GGG-G-GUUA-CCCAC-CCGAUC--CCAUUCCGAACUCGGUCGUUAAG-UCCCCC-UGGG-CC-AAUGGUA-CU-UCGUC-UCAA---GGC-GCGGGAGAGUAG-GU-C-G-CCGCCA---G-G----------
>Caulobacter sp. 4
------GAC-C-CGGCGGCU-UU-GCC-GGG-G-GUUC-CCCAC-CCGAUC--CCAUUCCGAACUCGGUCGUUAAG-UCCCCC-UGGG-CC-AAUGGUA-CU-UCGUC-UCAA---GGC-GCGGGAGAGUAG-GU-C-G-CCGCCA---G-GUCU-------
>Ehrlichia chaffeensis 1
------GGG-U-UGGUGGUA-AU-AGC-GGA-A-GUGG-UACAC-CCAGCUU-ACAUUUCGAACCUGGAAGUUAAG-CCUUCU-AGCG-CU-GAUGGUA-CU-UUGUC-UUAA---GAC-AUGGGAGAGUAA-GU-C-A-CUGCCA---C-CCUU-------
>Ehrlichia ruminantium 1
------GGG-U-UGGUGGUA-AU-AGC-AGA-A-GUGA-UACAC-CCAGCU--ACAUUUCGAACCUGGAAGUUAAG-CCUUCU-AGCG-CU-UAUGGUA-CU-UUGUC-UUAA---GGC-ACGGGAGAGUAG-GU-C-G-CUGCCA---C-CCUU-------
>Erythrobacter longus 1
-----UUGC-U-UGGUGGUC-CU-AGC-GAC-U-GUGA-CCCAC-CCGAUC--CCAUCUCGAACUCGGCCGUGAAA-CCAGUU-AGCG-CC-GAUGGUA-CU-AUGUC-UUAA---GGC-AUGGAAGAGUAG-GU---G-CCGCCA---G-GCAU-------
>Erythromicrobium ezovicum 1
------UGC-U-UGGCUGGU-AUAGGC-GUC-U-GAAC-CGAAC-CCGAUC--CCAUCUCGAACUCGGCCGGUAAA-UCAGAC-AGCG-CC-GAUGGUA-CU-AACGC-UGAA---GCG-UUGGAAGAGUAG-GU-C-GUUGUCCA---A-GCU--------
>Erythromicrobium hydrolyticum 1
-----UGCC-U-UGGUGCAC-AG-UGC-UUG-U-GGUA-CCCAC-GCGAUC--CCAUCUCGGACUCGGCCGUGAAA-CCAGAC-AGCG-CC-GAUGGUA-UC-AACGC-UCAA---GCG-UUGGAAGAGUAG-GU-C-G-CCGCCA---U-GGAU-------
>Erythromicrobium ramosum 1
-----UGCC-U-UGGCCUCG-AU-AGU-GCG-U-CGUA-CCCAC-GCGAUC--CCAUCUCGGACUCGGCCGUGAAA-CCAGAC-UGCG-CC-GAUGGUA-CU-AACUG-CUAA---GCG-UUGGAAGAGUAG-GU-C-G-CUGCCA---A-GGGU-------
>Gluconacetobacter xylinus 1
-----AGAC-C-UGGUGGCA-AU-GGC-GGG-G-AAUA-UCCAC-CCGAUC--CCAUCCCGAACUCGGCCGUGAAA-UGCCCC-AGCG-CC-CAUGAUA-CU-GUGCC-UUAA---GGC-ACGGGAAAGUCG-GU-C-G-CCGCCA---G-GUCU-------
>Gluconobacter oxydans 3
----GG-AC-C-UGGUGGCC-AU-UGC-GAG-G-GCCC-UACAC-CCGAUC--CCUUCCCGAACUCGGCCGUGAAA-UCCCUC-AGCG-CC-UAUGAUA-CU-GCACC-UCAA---GGU-GCGGAAAAGUCG-GU-C-G-CCGCCA---G-GU-CC------
>Gluconobacter oxydans 4
----RG-AC-C-UGGUGGCC-AU-UGC-GAG-G-GCCC-UACAC-CCGAUC--CCAUCCCGAACUCGGCCGUGAAA-UCCCUC-AGCG-CC-UAUGAUA-CC-GUACC-UUAA---GGU-GCGGAAAAGUCG-GU-C-G-CCGCCA---G-GU-CC------
>Hyphomicrobium sp. 1
------GAC-C-UGGUGAUU-AU-GAC-GGA-G-UGGC-UGCAC-CCGAUC--CCAUCCCGAACUCGGCCGUGAAA-CGCUCC-AGCG-CC-AAUGGUA-CU-GCGUC-UUAA---GAC-GUGGGAGAGUAG-GU-C-G-UCGCCA---G-GUCU-------
>Hyphomicrobium sp. 2
------GAC-C-UGGUGAUU-AU-GGC-GGG-G-UGGC-UGCAC-CCGAUC--CCAUUCCGAACUCGGCCGUGAAA-CGCCCC-UGCG-CC-GAUGGUA-CU-UCGUC-UUAA---GAC-GCGGGAGAGUAG-GU-C-G-UUGCCA---G-GUCU-------
>Hyphomicrobium sp. 2
------GAC-C-UGGUGAUU-AU-GGC-GGG-G-UGGC-UGCAC-CCGAUC--CCAUUCCGAACUCGGCCGUGAAA-CGCCCC-UGCG-CC-GAUGGUA-CU-UCGUC-UUAA---GAC-GCGGGAGAGUAG-GU-C-G-UUGCCA---G-GUCU-------
>Hyphomicrobium sp. 3
------GAC-C-UGGUGAUU-AU-GGC-GGG-U-GGCC-UGCAC-CCGAUC--CCAUUCCGAACUCGGCCGUGAAA-CCGCCC-UGCG-CC-GAUGGUA-CU-UCGUC-UUAA---GAC-GCGGGAGAGUAG-GU-C-G-UUGCCA---G-GUCC-------
>Hyphomicrobium sp. 4
-----CGAC-C-UGGUGAUU-AU-GGC-GGG-G-UGGC-UGCAC-CCGAUC--CCAUUCCGAACUCGGCCGUGAAA-CGCCCC-UGCG-CC-GAUGGUA-CU-UCGUC-UUAA---GAC-GCGGGAGAGUAG-GU-C-G-UUGCCA---G-GU---------
>Hyphomicrobium sp. 5
-----UGAC-C-UGGUGAUU-AU-GGC-GGG-G-UGGC-UGCAC-CCGAUC--CCAUUCCGAACUCGGCCGUGAAA-CGCCCC-AGCG-CC-AAUGGUA-CU-UCGUC-UUAA---GAC-GCGGGAGAGUAG-GU-C-G-UCGCCA---G-GUCU-------
>Hyphomicrobium sp. 6
------GAC-C-UGGUGAUU-AU-GGC-GGG-G-CGGC-UGCAC-CCGACC--CCAUUCCGAACUCGGCCGUGAAA-CGCCCC-UGCG-CC-GAUGGUA-CU-UCGUC-UUAA---GAC-GCGGGAGAGUAG-GU-C-G-UUGCCA---G-GUCU-------
>Hyphomicrobium sp. 7
------GAC-C-UGGUGAUU-AU-GGC-GGG-U-GGUC-UGCAC-CCGAUC--UCAUUCCGAACUCGGCCGUGAAA-CCGCCC-AGCG-CC-AAUGGUA-CU-UCGUC-UUAA---GAC-GCGGGAGAGUAG-GU-C-G-UCGCCA---G-GUCU-------
>Hyphomicrobium vulgare 1
-----CGAC-C-UGGUGAUU-AU-GGC-GGG-G-UGGC-UGCAC-CCGAUC--CCAUUCCGAACUCGGCCCUGAAA-CGCCCC-AGCG-CC-AAUGGUA-CU-CUGUC-UUAA---GAC-GCGGGAGAGUAG-GC-C-G-CCGCCA---G-GU---------
>Hyphomicrobium vulgare 2
------GAC-C-UGGUGAUU-AU-GGC-GGG-U-GGUC-UGCAC-CCGAUC--UCAUUCCGAACUCGGCCGUGAAA-CCGCCC-AGCG-CC-AAUGGUA-CU-UCGUC-UUAA---GAC-GCGGGAGAGUAG-GU-C-G-UCGCCA---G-GUCU-------
>Hyphomonas oligotropha 1
------GAC-C-CGGUGGUU-AU-GGC-CAG-G-GAUC-CCCAC-CUGAUC--CCAUCCCGAACUCAGUCGUUAAG-UCCCCU-UGCG-CC-AAUGGUA-CU-ACGUC-UUAA---GGC-GUGGGAGAGUAG-GU-C-G-CUGCCG---G-GUCC-------
>Hyphomonas polymorpha 1
-----CGAC-C-UGGUGGUA-AU-GGU-AGG-G-GGUC-UGGAC-CGGAUC--CCAUCCCGAACUCCGUCGUUAAG-CCCCCU-UGCG-CC-AAUGGUA-CC-ACGUC-UUAA---GGU-GUGGGAGAGUAG-GU-C-G-CUGCCG---G-GUC--------
>Mesorhizobium loti 1
------GAC-C-UGGUGGUU-AU-GGC-GGA-G-CGGC-UGCAC-CCGAUC--CCAUUCCGAACUCGGCCGUGAAA-CGCUCC-AGCG-CU-GAUGGUA-CU-UCGUC-UCAA---GAC-GCGGGAGAGUAG-GU-C-G-CUGCCA---G-GUCU-------
>Methylobacterium extorquens 1
-------GC-C-UGGCGGCC-UG-AGC-GGU-G-UGGA-AGAAC-CCGAUC--CCAUCUCGAACUCGGCCGUUAAA-CACACC-AGCG-CC-GAUGGUA-CU-GUGUC-UCAA---GAC-ACGGGAGAGUCG-GU-C-G-CCGCCA---G-GCCC-------
>Methylobacterium organophilum 1
--------C-C--GGCGGCC-UG-AGC-GGU-G-UGCC-AGAAC-CCGAUC--CCAUCUCGAACUCGGCCGUUAAA-CACACC-AGCG-CC-CAUGGUA-CU-GUGCU-CCAA---GAC-ACGGGAGAGUCG-GU-C-G-CCGCCA---G-GCU--------
>Methylobacterium sp. 1
----------C-UGGUGGCC-UG-AGC-GGU-G-UGCCCAGAAC-CCGAUC--CCAUCUCGAACUCGGCCGUUAAA-CACACC-AGCG-CC-CAUGGUA-CU-GUGUC-UCAA---GAC-ACGGGAGAGUCG-GU---G-CCGCCA---G-GCCU-------
>Methylocystis parvus 1
------NNC-U-UGGUGACC-AU-AGC-GAG-C-GUGA-ACCAC-CCGAUC--CCAUCCCGAACUCGGAAGUGAAA-CCGCUU-AGCG-CC-GAUGAUA-GU-GUGGC-CGUUU--GCC-AUGCGAAAGUAG-GG-C-A-UUGCMA---A-GCN--------
>Methylosinus sporium 1
------NGC-C-UGGUGGCU-UU-AGC-GAA-G-CGAU-CAGAC-CCGAUC--CCAUCCCGAACUCGGCCGUCAAA-CGCUCC-AGCG-CC-AAUGGUA-CU-AUGUC-UCAA---GAC-CUGGGAGAGUAG-GU-C-G-UCGCCA---G-GCUN-------
>Methylosinus trichosporium 2
------NNC-U-UGGUGACU-AU-AGU-GAG-C-GUGA-ACCAC-CCGAUC--CCAUCCCGAACUCGGAAGUGAAA-CCGCUU-AGCG-CC-GAUGAUA-GU-GUGGC-CGUUU--GCC-AUGCGAAAGUAG-GG-C-A-UUGCMA---A-GYN--------
>Methylosinus trichosporium 1
------GGC-A-UGGUGCCU-UU-AGC-GAA-G-UGAU-UAGACACGUAUC--CCAUCCUGAACUCGGCCGUCAAA-CGCUCC-AGCG-CC-AAUGGUA-CU-AUGUC-UCAA---GAC-CUGGGAGAGUAG-GU-C-G-UCGCCA---G-GCNN-------
>Nitrobacter winogradskyi 1
-----CGAC-C-UGGUGGUU-CU-AGC-GAG-G-AGCU-UGAAC-CCGAUC--CCAUCCCGAACUCGGCCGUUAAA-CUCCUC-AGCG-CC-AAUGGUA-CC-AUGGC-UUAA---GCC-CUGGGAGAGUAG-GU-C-G-CUGCCA---G-G----------
>Paracoccus sp. 1
------GGU-C-UGGUGGCU-UU-AGC-ACGAG-CA-A-AACAC-CCGAUC--CCAUCCCGAACUCGGCCGUUAAG-UGCCGU-CGCG-CC-AAUGGUA-CU-GCGUC-UCAA---GAC-GUGGGAGAGUAG-GU-C-A-CCGCCA---G-ACC--------
>Paracoccus denitrificans 1
-------GU-C-UGGUGGCC-AA-AGC-ACGAG-CA-A-AACAC-CCGAUC--CCAUCCCGAACUCGGCCGUUAAG-UGCCGU-CGCG-CC-AAUGGUA-CU-GCGUC-AAAA---GAC-GUGGGAGAGUGG-AU-C-A-CCGCCA---G-ACC--------
>Paracoccus denitrificans 2
-------GU-C-UGGUGGCC-AA-AGC-ACGAG-CA-A-AACAC-CCGAUC--CCAUCCCGAACUCGGCCGUUAAG-UGCCGU-AGCG-CC-AAUGGUA-CU-GCGUC-AAAA---GAC-GUGGGAGAGUAG-GU-C-A-CCGCCA---G-ACC--------
>Paracoccus versutus 1
--------U-C-UGGUGGCU-UU-AGC-ACG-A-GCAA-AACAC-CCGAUC--CCAUCCCGAACUCGGCCGUUAAG-UGCCGU-CGCG-CC-AAUGGUA-CU-GCGUC-AAAA---GAC-GUGGGAGAGUAG-GU-C-A-CCGCCA---G-ACC--------
>Prosthecomicrobium enhydrum 1
------GAU-C-UGGUGGUU-AU-CGC-GCG-G-GGCC-CGAAC-CCGAUC--CCAUCCCGAACUCGACCGUUAAA-UCCCGU-CGCG-CC-AAUGGUA-CU-AAGUC-UCAA---GAC-UUGGGAGAGUAG-GU-C-G-CCGCCA---G-GUCU-------
>Renobacter vaculatum 1
----------C-UGGUGGCC-AU-UGC-GAG-G-AGCC-CCAAU-UCGAUC--UCACUCCGAACUCGGCCGUUAAA-CUCCUC-AGCG-CC-GAUGGUA-CU-AUGUC-UCAA---GAC-CUGGGAGAGUAG-GU-C-G-CUGCCA---G-GCCU-------
>Rhodobacter capsulatus 1
--------U-U-UGGUGGUC-AU-AGGCUUG-G-CU-A-AACAC-CCGAUC--CCAUCCCGAACUCGGCAGUUAAG-GGCCAA-CACG-CC-GAUGGUA-CU-GCGUC-UCAA---GAC-GUGGGAGAGUAG-GU-C-A-CCGCCA---A-ACC--------
>Rhodobacter capsulatus 2
------CGU-U-UGGUGGUC-AU-AGCGUUG-G-CU-A-AACAC-CCGAUC--CCAUCCCGAACUCGGCCGUUAAG-GGCCAA-CACG-CC-GAUGGUA-CU-GCGUC-UCAA---GAC-GUGGGAGAGUAG-GU-C-A-CCGCCA---A-ACC--------
>Rhodobacter capsulatus 3
-------GU-U-UGGUGGUC-AU-AGCGACG-G-CU-A-AACUC-CCGAUC--CCUUCCCGAACUCGGCCGAUAAG-GGCCGU-CACG-CC-AAUGGUA-CU-GCGUC-UCAA---GAC-GUGGGAGAGUAG-GU-C-A-CCGCCA---A-ACC--------
>Rhodobacter sphaeroides 1
----------U-UGGUGGCC-AU-AGU-ACG-A-GUAA-AAUAC-CCGAUC--CCAUCCCGAACUCGGCAGUUAAG-UGCCGU-CGCG-CC-AAUGGUA-CU-GCGUC-UGAA---GAC-GUGGGAGAGUAG-GU-C-G-CCGCCA---G-ACC--------
>Rhodobacter sphaeroides 2
------GGU-C-UGGUGGCC-AU-AGC-ACG-A-GCAA-AACAC-CCGAUC--CCAUCCCGAACUCGGCAGUUAAG-UGCCGU-CGCG-CC-AAUGGUA-CU-GCGUC-UCAA---GAC-GUGGGAGAGUAG-GU-C-G-CCGCCA---G-ACC--------
>Rhodobacter sphaeroides 3
------GGU-C-UGGUGGCC-AU-AGC-ACG-A-GCAA-AACAC-CCGAUC--CCAUCCCGAACUCGGCAGUUAAG-UGCCGU-CGCG-CC-AAUGGUA-CU-GCGUC-UAA----GAC-GUGG-AGAGUAG-GU---G-C-GCCA---G-ACCUG------
>Rhodopseudomonas palustris 2
-----CGGC-C-UGGUGGUU-CU-AGC-GAG-G-AGCC-UGAAC-CCGUUC--CCAUCCCGAACACGGCCGUUAAA-CUCCUC-AGCG-CC-AAUGGUA-CU-CCGUC-UCAA---GAC-GCGGGAGAGUAG-GU---G-CCGCCA---G-GCCU-------
>Rhodospirillum rubrum 1
-----UGGC-C-UGGUGGUC-AU-UGC-GGG-C-UCGA-AACAC-CCGAUC--CCAUCCCGAACUCGGCCGUGAAA-GAGCCC-UGCG-CC-AAUGGUA-CU-GCGUC-UUAA---GGC-GUGGGAGAGUAG-GU-C-G-CCGCCA---G-GCCU-------
>Rickettsia moozeri 1
------AGC-U-UGGUGGCC-AU-AGC-AUG-A-GUGA-AACAC-ACGAUC--CCAUCCCGAACUCGAACGUGAAA-CCUCAU-AGCG-CU-AAUGGUA-CU-AUGUC-AUAA---GUC-AUGGGAGAGUAA-GU-C-A-CUGCCA---A-GCUU-------
>Rhodopseudomonas palustris 3
-----CGGC-C-UGGUGGUU-CU-AGC-GAG-G-AGCC-UGAAC-CCGUUC--CCAUCCCGAACACGGCCGUUAAA-CUCCUC-AGCG-CC-AAUGGUA-CU-CCGUC-UCAA---GAC-GCGGGAGAGUAG-GU-C-G-CCGCCA---G-GCCU-------
>Rickettsia conorii 1
------AGC-U-UGGUGGUU-AU-AGC-AUG-A-GUGA-AACAC-ACGAUC--CCAUCCCGAACUCGAAUGUGAAA-CCUCAU-AGCG-CU-AAUGGUA-CU-AUGUC-AUAA---GGC-AUGGGAGAGUAA-GU-C-G-CUGCCA---A-GCUU-------
>Rickettsia felis 1
------AGC-U-UGGUGGUU-AU-AGC-AUG-A-GUGA-AACAC-ACGAUC--CCAUCCCGAACUCGAACGUGAAA-CCUCAU-AGCG-CU-AAUGGUA-CU-AUGUC-AUAA---GGC-AUGGGAGAGUAA-GU-C-G-CUGCCA---A-GCUU-------
>Rickettsia prowazekii 1
------AGC-U-UGGUGGUC-AU-AGC-AUG-A-GUGA-AACAC-ACGAUC--CCAUCCCGAACUCGAACGUGAAA-CCUCAU-AGCG-CU-AAUGGUA-CU-AUGUC-AUAA---GCC-AUGGGAGAGUAA-GU-C-G-CUGCCA---A-GCUU-------
>Silicibacter pomeroyi 1
------GGU-U-UGGUGGUC-AU-AGC-GAG-C-GCAA-UACAC-CCGGUC--CCUUCCCGAACCCGGAAGUUAAG-UGCCUC-CGCG-CC-AAUGGUA-CU-CGGGC-UCAA---GCC-CCGGGAGAGUAG-GU-C-A-CCGCCA---A-ACC--------
>Roseococcus thiosulfatophilus 1
-----UAGCGU-UGCGAUGC-AU-GUG-GAG-U-GUA--UACAC-CCGAUC--CCAUCGCGAACUCGGCCGUGAAA-CACUCC-AGCG-CC-UAUGGUA-CU-GCGGC-UUAA---GCG-GCGGGAGAGUCG-GU-C-A-GCGCCG---A-GCU--------
>Stella humosa 1
-----CGAC-C-UGGUGGCC-CA-AGU-GAG-G-GGGC-UGCAC-CCGAUC--CCAUCCCGAACUCGGCCGUGAAA-ACCCUC-AGCG-CC-GAUGGUA-CU-GCGUC-UUAA---GGC-GCGGAAGAGUAG-GU-C-G-CCGCCA---G-G----------
>Roseococcus thiosulfatophilus 2
----UGCGC-U-U-GCGCUC-GG-UGU-GUA-G-UGUA-CAUAC-CCGAUC--CCAUCCCGAGCUCGGCCGUGAAA-CACUCC-AGCG-CC-UAUUGUA-CC-GAGGC-UUAA---GCG-GCGGGAGAGUCG-GU-C-A-GCGCCA---G-GGCC-------
>Sandaracinobacter sibiricus 1
-----AGCC-U-UGGUCACA-UG-UGC-CCC-U-GGUA-CCCAC-GCGAUC--CCAUCUCGAACUCGGCCGUGAAA-CCAGGU-AGCG-CC-GAUGGUA-CU-GCCGC-UUAA---GCG-CCGGAAGAGUAG-GG-U-G-CCGCCA---A-GGCU-------
>Seliberia stellata 1
-------GC-C-UGGCGGCC-CU-AGC-GAA-G-CGCC-UCAAC-CCGAUC--UCAUCCCGAACUCGGCCGUUAAA-CGCUUC-AGCG-CC-AAUGGUA-CU-AUGGC-UUAA---GCC-CUGGGAGAGUAG-GU-C-G-CUGCCA---G-GCCU-------
>Sinorhizobium meliloti 1
-----CGAC-C-UGGUGGUU-CU-GGC-GGG-G-UGGC-UGCAC-CCGUUC--CCAUUCCGAACACGGCCGUGAAA-CGCCCC-AGCG-CC-GAUGGUA-CU-UCGUC-UUAA---GAC-GCGGGAGAGUAG-GU-C-G-CUGCCA---G-GUCU-------
>Sphingomonas ursincola 1
-----UUGC-U-UGGUCACC-AU-AGC-GUC-A-GAUA-CCCAC-GCGAUC--CCAUCUCGAACUCGGCCGUGAAA-CCUGAC-UGCG-CC-GAUGGUA-CU-ACCGC-UUAA---GCG-UUGGAAGAGUAG-G--C-G-UCGCCA---A-GGC--------
>Starkeya novella 1
-----CGGC-C-UGGUGGCC-AU-UGC-GAG-G-AGCC-UGAAC-CCGAUC--CCAUCCCGAACUCGGCCGUUAAA-CUCCUC-AGCG-CC-GAUGGUA-CU-AUGUC-UUAA---GAC-CUGGGAGAGUAG-GU-C-G-CUGCCA---G-GCCU-------
>Tuberoidobacter mutans 1
----------C-UGGUGGCC-AU-UGC-GAG-G-AGCC-UGAAC-CCGACU--CCACUCCGAACUCGGCCGUUAAA-CUCCUC-AGCG-CC-GAUGGUA-CU-AUGUC-UCAA---GAC-CUGGGAGAGUAG-GU-C-G-CUGCCA---G-GUCU-------
>Vibrio adaptatus 1
-----UUGC-U-UGGUGGCU-AU-AGC-GUC-U-GUGA-CCCAC-CCGAUC--CCAUCUCGAACUCGGCCGUGAAA-CCGGAC-UGCG-CC-GAUGGUA-CU-AGUGCUUCA---AGCA-CUGGAAGAGUAG-GU-C-G-UCGCCA---G-GCAU-------
>Vibrio cyclosites 1
------GAC-C-UGGUGGUU-AU-GGC-GGA-G-CGGC-UGCAC-CCGAUC--CCAUUCCGAACUCGGCCGUGAAA-CGCUCC-AGCG-CU-GAUGGUA-CU-UCGUC-UCAA---GAC-GCGGGAGAGUAG-GU-C-G-CUGCCA---G-GUCU-------
>type II methanotrophic bacterium 1
------AGC-C-UGGUGACU-UU-AGC-GAA-G-UGAU-NAGAC-CGUAUC--CCAUCCCGAACUCGGCCGUCAAA-CGCUCC-AGCG-CC-AAUGGUA-CU-AUGUC-UCAA---GAC-CUGGGAGAGUAG-GU-C-G-UCGCCA---G-GCUN-------
>Wolbachia endosymbiont of B. malayi 1
--------C-U-UGGUGGUU-UU-AGC-AAA-A-AUGA-AACAC-CCGAUC--CCAUCUCGAAUUCGGAAGUGAAA-CUUUUU-AGCG-CU-GAUGGUA-CU-U-----GAAA--------AGGGAGAGUAG-GU-C-G-CUGCCA---A-GUUU-------
>Wolbachia endosymbiont of D. melanogaster 1
------GAC-U-UGGUGGCU-AU-AGC-AAA-A-AUGA-ACCAC-CCGAUC--UCAUCUCGAACUCGGAAGUGAAA-CUUUUU-AGCG-CU-GAUGGUA-CU-U-----GAAA--------AGGGAGAGUAG-GU-C-G-CCGCCA---A-GUUU-------
>Wolbachia pipientis 1
--------C-U-UGGUGGCU-AU-AGC-AAA-A-AUGA-ACCAC-CCGAUC--UCAUUUCGAACUCGGAAGUGAAA-CUUUUU-AGCG-CC-GAUGAUA-CU-U-----AAAA--------ACCCAAAGUAG-GU-C-G-UUGCCA---A-GU---------
>Xanthobacter viscosus 1
-------GC-C-UGGUGGCU-AU-GGC-GAG-G-AGUC-CGAAC-CCGAUC--CCAUCCCGAACUCGGCCGUUAAA-CUCCUC-AGCG-CC-AAUGGUA-CU-UCGUC-UCAA---GAC-GCGGGAGAGUAG-GU-C-G-CUGCCA---G-GCCU-------
>Zymomonas mobilis 1
-----UAGC-U-UGGUGGCU-AU-AGC-GUC-A-GUGA-CCCAC-CCGAUC--CCAUUUCGAACUCGGACGUGAAA-CCUGUCCUGCG-CC-GAUGGUA-CU-GUUGC-UUAA---GCA-ACGGAAGAGUAG-GU-C-G-UCGCCA---G-GCUU-------
>Achromobacter cycloclastes 1
-----CGAC-C-UGGUGGUU-CU-GGC-GGG-G-UGGC-UGCAC-CCGUUC--CCAUUCCGAACACGGCCGUGAAA-CGCCCC-AGCG-CC-GAUGGUA-CU-UCGUC-UUAA---GAC-GCGGGAGAGUAG-GU-C-G-CUGCCA---G-GUCU-------
>Achromobacter denitrificans 1
------UGC-C-UGACGACC-AU-AGC-GAG-U-UGGU-CCCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGACUU-UGCG-CC-GAUGAUA-GU-GGAC--GGAC----GU-CUGUGAAAGUAG-GU-C-A-UCGUCA---G-GC---------
>Achromobacter piechaudii 1
------UGC-C-UGACGACC-AU-AGC-AAG-G-UGGU-ACCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGCCUU-CGCG-CC-GAUGAUA-GU-GGAC--GGAC----GU-CUGUGAAAGUAG-GU-C-A-UCGUCA---G-GM---------
>Achromobacter xylosoxidans 2
------UGC-C-UGACGACC-AU-AGC-AAG-G-UGGU-ACCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGCCUU-UGCG-CC-GAUGAUA-GU-GGAC--GGAC----GU-CUGUGAAAGUAG-GU-C-A-UCGUCA---G-GM---------
>Acidovorax delafieldii 1
------UGC-C-UGAUGACC-AU-AGC-AAG-U-UGGU-CCCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGACUU-UGCG-CC-GAUGAUA-GU-GCGG--GUUC----CC-GUGUGAAAGUAG-GU-C-A-UCGUCA---G-GC---------
>Acidovorax facilis 1
------UGC-C-UGAUGACC-AU-AGC-AAG-U-UGGU-ACCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGACUU-UGCG-CC-GAUGAUA-GU-GCGG--GUUC----CC-GUGUGAAAGUAG-GU-C-A-UCGUCA---G-GC---------
>Acidovorax temperans 1
------UGC-C-UGAUGACC-AU-AGC-AAG-U-UGGU-ACCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGACUU-UGCG-CC-GAUGAUA-GU-GCGG--GUUC----CC-GUGUGAAAGUAG-GU-C-A-UCGUCA---G-GC---------
>Acidovorax temperans 1
------UGC-C-UGAUGACC-AU-AGC-AAG-U-UGGU-ACCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGACUU-UGCG-CC-GAUGAUA-GU-GCGG--GUUC----CC-GUGUGAAAGUAG-GU-C-A-UCGUCA---G-GC---------
>Alcaligenes faecalis 1
------UGC-U-UGACGACC-AU-AGC-GAG-G-UGGU-CCCAC-ACCUUC--CCAUCCCGAACAGGAUUGUGAAA-CGCCUU-UGCG-CC-GAUGAUA-GU-GGAC--GGAC----GU-CUGUGAAAGUAG-GU-C-A-UCGUCA---A-GC---------
>Alcaligenes faecalis 2
-------GC-U-UGACGACC-AU-AGC-GAG-G-UGGU-CCCAC-ACCUUC--CCAUCCCGAACAGGAUUGUGAAA-CGCCUU-UGCG-CC-GAUGAUA-GU-GGAC--GGAC----GU-CUGUGAAAGUAG-GU-C-A-UCGUCA---A-GCU--------
>Alcaligenes faecalis 3
------UGC-U-UGACGACC-AU-AGA-GCG-U-UGGA-ACCAC-CUGAUC--CCAUCCCGAACUCAGCAGUGAAA-CGACGC-AUCG-CC-GAUGGUA-GU-GUGGG-GUCU--CCCC-AUGUGAGAGUAG-GU-C-A-UCGUCA---A-GCUU-------
>Alcaligenes sp. 1
----UUAGC-C-UGACGACC-AU-AGC-AAG-G-UGGU-ACCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGCCUU-UGCG-CC-GAUGAUA-GU-GGAC--GGAC----GU-CUGUGAAAGUAG-GU-C-A-UCGUCA---G-GCU--------
>Aquaspirillum serpens 1
------UGC-U-UGGCGGCC-AU-AGC-GAG-U-UGGU-ACCAC-CCCUUC--CCUUCCCGAACAGGACCGUGAAA-CGACUC-AGCG-CC-GAUGAUA-GU-GCAG--AUCC----CU-GUGUGAAAGUAG-GU-C-U-CCGCCA---A-GCU--------
>Achromobacter xylosoxidans 1
--------C-C-UGACGACC-AU-AGC-AAG-G-UGGU-ACCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGCCUU-UGCG-CC-GAUGAUA-GU-GGAC--GGAC----GU-CUGUGAAAGUAG-GU-C-A-UCGUCA---G-GCU--------
>Azoarcus sp. 1
------AGU-C-UGACGACC-AU-AGC-GUC-C-UGGC-ACCAC-CCCUUC--CCAUCCCGAACAGGACCGUGAAA-CAGGAC-CGCG-CC-GAUGAUA-GU-GCCU--AAAC----GG-GUGCGAAAGUAG-GU-C-A-UCGUCA---G-ACU--------
>Bordetella bronchiseptica 1
-------GC-C-UGACGACC-AU-AGC-AAG-G-UGGU-CCCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGCCUU-CGCG-CC-GAUGAUA-GU-GGAU--GUAC----AU-CUGUGAAAGUAG-GU-C-A-UCGUCA---G-GCU--------
>Bordetella parapertussis 1
-------GC-C-UGACGACC-AU-AGC-AAG-G-UGGU-CCCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGCCUU-CGCG-CC-GAUGAUA-GU-GGAU--GUAC----AU-CUGUGAAAGUAG-GU-C-A-UCGUCA---G-GCU--------
>Burkholderia mallei 1
------UGC-C-UGAUGACC-AU-AGC-GAG-U-CGGU-CCCAC-CCCUUC--CCAUCCCGAACAGGACCGUGAAA-CGACUC-CACG-CC-GAUGAUA-GU-GCGG--AUUG---CCC-GUGUGAAAGUAG-GU-A-A-UCGUCA---G-GC---------
>Burkholderia pseudomallei 1
------UGC-C-UGAUGACC-AU-AGC-GAG-U-CGGU-CCCAC-CCCUUC--CCAUCCCGAACAGGACCGUGAAA-CGACUC-CACG-CC-GAUGAUA-GU-GCGG--AUUG---CCC-GUGUGAAAGUAG-GU-A-A-UCGUCA---G-GC---------
>Candidatus Tremblaya princeps 1
-----AGUC-C-UGACGCGC-AA--UG-AUG-C-UGGA-CCCAC-AGCUGC--CCAUUCCGAACAGACAUGUGACA-CAGCGC-GCUG-CC-GAUGAUA-GU-GCCGG-CGUGA--CCG-GUGCGAAAGCAG-GU-U-C-G-GUCA---G-GA---------
>Candidatus Tremblaya princeps 2
-----AGUC-C-UGACGCGC-AA--UG-AUG-C-UGGA-ACCAC-AGCUGA--CCAUUCCGAACAGAUAUGUGACA-CAGCGC-GCGG-CC-GAUGAUA-GU-GCCGG-CGUGC--CCG-GUGCGAAAGCAG-GU-A-U--CGUCA---G-GA---------
>Candidatus Tremblaya princeps 3
------GUC-C-UGACGCGC-AA--UG-AUG-C-UGGA-CCCAC-AGCUGC--CCAUUCCGAACAGACAUGUGACA-CAGCGC-GCUG-CC-GAUGAUA-GU-GCCGG-CGUGA--CCG-GUGCGAAAGCAG-GU-U-C-G-GUCA---G-GA---------
>Candidatus Tremblaya princeps 5
-----AGUC-C-UGACGCGC-CA--UG-AUG-C-UGGA-CCCAC-AGCUGC--CCAUUCCGAACAGAAAUGUGACA-CAGCGC-GCGG-CC-GAUGAUA-GU-GCCGG-CGUGC--CCG-GUGCGAAAGCAG-GU-U-A--UGUCA---G-GA---------
>Candidatus Tremblaya princeps 6
-----AGUC-C-UGACUCGC-AA--UG-AUG-C-UGGA-CCCAC-AGCUGC--CCAUUCCGAACAGUUAUGUGACA-CAGCAU-GCGG-CU-GAUGAUA-GU-GCCGG-CAUGC--CCG-GUGCGAAAGCAG-GU-U-U--CGUCA---G-GA---------
>Bordetella pertussis 1
-------GC-C-UGACGACC-AU-AGC-AAG-G-UGGU-CCCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGCCUU-CGCG-CC-GAUGAUA-GU-GGAU--GUAC----AU-CUGUGAAAGUAG-GU-C-A-UCGUCA---G-GCU--------
>Burkholderia andropogonis 1
------UGC-C-UGAUGACC-AU-AGC-GAG-U-CGGU-SCCAC-CCCUUC--CCAUCCCGAACAGGACCGUGAAA-CGACUC-CACG-CC-AAUGAUA-GU-GCGG--AUUGC---CC-GUGUGAAAGUAG-GU-A-A-UCGUCA---G-GC---------
>Burkholderia caryophylli 1
------UGC-C-UGAUGACC-AU-AGC-GAG-U-UGGU-ACCAC-CCCUUC--CCAUCCCGAACAGGACCGUGAAA-CGACUC-CACG-CC-GAUGAUA-GU-GCGG--AUUGC---CC-GUGUGAAAGUAG-GU-A-A-UCGUCA---G-GC---------
>Burkholderia cepacia 1
-------GC-C-UGACGACC-AU-AGC-GAG-U-CGGU-CCCAC-UCCUUC--CCAUCCCGAACAGGACCGUGAAA-CGACUC-UACG-CC-GAUGAUA-GU-GCGG--AUUC----CC-GUGUGAAAGUAG-GU-A-A-UCGUCA---G-GCCU-------
>Burkholderia cepacia 2
------GGC-C-UGAUGACC-AU-AGC-GAG-U-CGGU-CCCAC-CCCUUC--CCAUCCCGAACAGGACCGUGAAA-CGACUC-UACG-CC-GAUGAUA-GU-GCGG--AUUC----CC-GUGUGAAAGUAG-GU-A-A-UCGUCA---G-GCU--------
>Burkholderia cepacia 3
------UGC-C-UGAUGACC-AU-AGC-GAG-U-CGGU-CCCAC-CCCUUC--CCAUCCCGAACAGGACCGUGAAA-CGACUC-UACG-CC-GAUGAUA-GU-GCGG--AUUC----CC-GUGUGAAAGUAG-GU-A-A-UCGUCA---G-GC---------
>Comamonas terrigena 1
-------GC-C-UGAUGACC-AU-AGC-GAU-U-UGGU-ACCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGAAUU-UGCG-CC-GAUGAUA-GU-GCGG--GUUC----CC-GUGUGAAAGUAG-GU-C-A-UCGUCA---G-GCU--------
>Comamonas terrigena 2
------UGC-C-UGAUGACC-AU-AGC-GAU-U-UGGU-ACCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGAAUU-UGCG-CC-GAUGAUA-GU-GCGG--GUUC----CC-GUGUGAAAGUAG-GU-C-A-UCGUCA---G-GC---------
>Comamonas testosteroni 1
------UGC-C-UGAUGACC-AU-AGC-AAG-U-UGGU-ACCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGACUU-UGCG-CC-GAUGAUA-GU-GCGG--GUUC----CC-GUGUGAAAGUAG-GU-C-A-UCGUCA---G-GC---------
>Cupriavidus necator 1
------UGC-C-UGGUGACC-AU-AGC-GAG-C-UGGA-ACCAC-CCCUUC--CCAUCCCGAACAGGUCCGUGAAA-CAGCUC-CGCG-CC-GAUGAUA-GU-GCGG--AUUC----CC-GUGUGAAAGUAG-GU-C-A-UCGCCA---G-GC---------
>Delftia acidovorans 1
------UGC-C-UGAUGACC-AU-AGC-AAG-U-UGGU-ACCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGACUU-UGCG-CC-GAUGAUA-GU-GCGG--GUUC----CC-GUGUGAAAGUAG-GU-C-A-UCGUCA---G-GC---------
>Hydrogenophaga palleronii 1
------UGC-C-UGACGACC-AU-AGC-GAG-G-UGGU-ACCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGCCUU-UGCG-CC-GAUGAUA-GU-GCGG--GUUC----CC-GUGUGAAAGUAG-GU-C-A-UCGUCA---G-GM---------
>Hydrogenophaga palleronii 1
------UGC-C-UGACGACC-AU-AGC-GAG-G-UGGU-ACCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGCCUU-UGCG-CC-GAUGAUA-GU-GCGG--GUUC----CC-GUGUGAAAGUAG-GU-C-A-UCGUCA---G-GM---------
>Hydrogenophaga pseudoflava 1
------UGC-C-UGACGACC-AU-AGC-GAG-U-UGGU-CCCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGACUU-UGCG-CC-GAUGAUA-GU-GAGG--GUUC----CC-GUGUGAAAGUAG-GU-C-A-UCGUCA---G-GM---------
>Hydrogenophaga taeniospiralis 1
------UGC-C-UGACGACC-AU-AGC-GAG-G-UGGU-ACCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGCCUU-UGCG-CC-GAUGAUA-GU-GCGG--GUUC----CC-GUGUGAAAGUAG-GU-C-A-UCGUCA---G-GM---------
>Hydrogenophaga taeniospiralis 1
------UGC-C-UGACGACC-AU-AGC-GAG-G-UGGU-ACCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGCCUU-UGCG-CC-GAUGAUA-GU-GCGG--GUUC----CC-GUGUGAAAGUAG-GU-C-A-UCGUCA---G-GM---------
>Leptothrix discophora 1
-----AUGC-C-UGACGACC-AU-AGC-GAG-G-UGGU-CCCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGCCUC-AGCG-CC-GAUGAUA-GU-GCGC--AUUC----GC-GUGUGAAAGUAG-GU-C-A-UCGUCA---G-GCU--------
>Methylophilus methylotrophus 1
--------C-U-UGGGGACA-AU-AGC-GGU-U-UGGA-ACCAC-CCCUUC--CCAUCUCGAACAGGGCCGUGAAA-CGAACU-UGCG-CC-AAUGAUA-GU-GUAC--UCUUC---GU-AUGCGAAAGUAG-GU-C-A-UCCCCA---A-GCC--------
>Ralstonia pickettii 1
------UGC-C-UGGUGACC-AU-AGC-GAG-U-CGGU-ACCAC-CCCUUC--CCAUCCCGAACAGGACCGUGAAA-CGACUC-CGCG-CC-GAUGAUA-GU-GCGG--AUUC----CC-GUGUGAAAGUAG-GU-C-A-UCGUCA---G-GC---------
>Ralstonia solanacearum 1
-------GC-C-UGGUGACC-AU-AGC-GAG-U-CGGU-ACCAC-CCCUUC--CCAUCCCGAACAGGACCGUGAAA-CGACUC-CGCG-CC-GAUGAUA-GU-GCGG--AUUC----CC-GUGUGAAAGUAG-GU-C-A-UCGCCA---G-GC---------
>Neisseria gonorrhoeae 1
-----AAGU-U-UGGCGGCC-AU-AGC-GAG-U-UGGU-CCCAC-GCCUUC--CCAUCCCGAACAGGACCGUGAAA-CGACUC-AGCG-CC-GAUGAUA-GU-GUGG--UUCUU---CC-AUGCGAAAGUAG-GU-C-A-CUGCCA---A-AC---------
>Neisseria meningitidis 1
-----AAGU-U-UGGCGGCC-AU-AGC-GAG-U-UGGU-CCCAC-GCCUUC--CCAUCCCGAACAGGACCGUGAAA-CGACUC-AGCG-CC-GAUGAUA-GU-GUGG--UUCUU---CC-AUGCGAAAGUAG-GU-C-A-CUGCCA---A-AC---------
>Thiomonas cuprina 1
-----ACGC-C-UGAUGACC-AU-AGC-GAG-G-UGGU-CCCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CACCUC-AGCG-CC-GAUGAUA-GU-GCGC--AUUC----GC-GUGUGAAAGUAG-GA-C-A-UCGUCA---G-GCAC-------
>Thiomonas perometabolis 1
------UGC-C-UGAUGACC-AU-GGC-GAA-C-UGGA-ACCAC-CCCUUC--CCAUCCCGAACAGGGCCGUGAAA-CAGUUC-AGCG-CC-GAUGAUA-GU-GCGC--AUUC----GC-GUGUGAAAGUAG-GA-C-A-UCGUCA---G-GCU--------
>Ralstonia solanacearum 2
------UGC-C-UGGUGACC-AU-AGC-GAG-U-CGGU-ACCAC-CCCUUC--CCAUCCCGAACAGGACCGUGAAA-CGACUC-CGCG-CC-GAUGAUA-GU-GCGG--AUUC----CC-GUGUGAAAGUAG-GU-C-A-UCCCCA---G-GC---------
>Rubrivivax gelatinosus 1
-------GC-C-UGAUGACC-AU-AGC-GAG-G-UGGU-CCCAC-UCCUUC--CCAUCCCGAACAGGAUAGUGAAA-CGCCUU-UGCG-CC-GAUGAUA-GU-GCGGG-UUC----CCC-GUGUGAAAGUAG-GA-C-A-UCGUCA---G--C---------
>Thiobacillus sp. 1
------UGU-C-UGGCGGCC-AU-AGC-GCA-G-UGGA-ACCAC-CCCUUC--CCAUCUCGAACAGGACCGUGAAA-CGCUGC-AGCG-CC-UAUGAUA-GU-UGAGGGUCU---CCCU-CCGCGAAAGUCG-GU-C-A-CCGCCA---G-ACAC-------
>Thiobacillus sp. 2
-------GU-U-UGGCGGCC-AU-AGC-GUC-U-UGGA-CCCAC-CCCUUC--CCAUCCCGAACAGGGACGUGAAA-CGAGAC-AGCG-CC-GAUGAUA-GU-GUGGA-UUA----CCC-AUGCGAAAGUAG-GU-C-A-CCGCCA---G-ACAA-------
>Thiobacillus thioparus 1
------UGU-C-UGACGACC-AU-AGC-AGA-G-UGGA-ACCAC-CCCUUC--CCAUCCCGAACAGGACGGUGAAA-CGCUCC-CGCG-CC-AAUGAUA-GU-AGGCA-CCU----CGC-CUGUGAAAGUAG-GU-C-A-UCGUCA---G-ACCU-------
>Thiomonas intermedia 1
-----AUGC-C-UGAUGACC-AU-GGC-GAA-C-UGGA-ACCAC-CCCUUC--CCAUCCCGAACAGGGCCGUGAAA-CAGUUC-AGCG-CC-GAUGAUA-GU-GCGC--AUUC----GC-GUGUGAAAGUAG-GA-C-A-UCGUCA---G-GCU--------
>Variovorax paradoxus 1
------USC-C-UGAUGACC-AU-AGC-GAC-G-UGGU-ACCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGACUU-UGCG-CC-GAUGAUA-GU-GCGG--GUUC----CC-GUGUGAAAGUAG-GU-C-A-UCGUCA---G-GC---------
>Vitreoscilla beggiatoides 1
------CGC-C-UGACGACC-AC-AGC-GAC-U-GUGA-ACCAC-CCGACC--CCAUCUCGAACUCGGUAGUGAAA-CCAGUC-AGCG-CC-GAUGAUA-GU-GUGGC-AUAU---GCC-AUGUGAAAGUAG-GU-C-A-UCGUCA---G-GCU--------
>Vitreoscilla filiformis 1
-------GC-C-UGAUGACC-AU-AGC-AAG-G-UGGU-CCCAC-UCCUUC--CCAUCCCGAACAGGACAGUGAAA-CGCCUU-AGCG-CC-GAUGAUA-GU-GCGG--UUCUC---CC-GUGUGAAAGUAG-GA-C-A-UCGUCA---G-GCU--------
>Vitreoscilla stercoraria 1
------UGU-U-UGACGACC-AU-AGC-GAG-U-UGGU-CCCAC-GCCUUC--CCAUCCCGAACAGGACCGUGAAA-CGACUU-AGCG-CC-GAUGAUA-GU-GUGG--AUUAC---CC-AUGUGAAAGUAG-GU-C-A-UCGUCA---A-ACGC-------
>Desulfovibrio vulgaris 1
--------C-C-UGGCGUCC-AU-GGA-GGA-G-GGGG-UACAC-CCGAUC--CCAUUCCGAACUCGGAAGUUAAG-CCCUCC-AUCG-CC-GAUGAUA-CU-GCGGG-GUAG---CUC-GUGGGAAAGUAG-GC-C-G-ACGCCA---G-GACU-------
>Desulfovibrio vulgaris 2
----UAG-C-C-UGGCGUCC-AU-GGA-GGA-G-GGGG-CACAC-CUGAUC--CCAUUCCGAACUCGGAAGUUAAG-CCCUCC-AUCG-CC-GAUGAUA-CU-GCGGG-GUAG---CUC-GUGGGAAAGUAG-GC-C-G-ACGCCA---G-GACU-------
>Myxococcus coralloides 1
--------U-C-GGGUGGCA-AU-GUC-GGA-G-GGGU-CACAC-CCGUUC--CCAUCCCGAACACGGAAGUUAAG-CCCUCC-AGAG-CC-GAUGGUA-CU-CCGCGGGAAA--CCGC-GUGGGAGAGUAG-GU-C-G-CUGCCG---G-AU---------
>Nannocystis exedens 1
-------UG-C-UGGUGGCU-AU-GGC-GGA-A-GGGC-CACAC-CCGAUC--CCAUCCCGAACUCGGUCGUUAAG-ACUUCC-AGCG-CC-GAUGGUA-CU-GCAGGGGCGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCA---G-CGU--------
>Polyangium cellulosum 1
-------UU-C-CGGUGGUG-AU-AUC-AAG-A-AGGC-UACAC-CCGAUC--CCAUACCGAACUCGGAAGUUAAG-CUUCUU-GGAG-CC-GAUGGUA-CU-GCCAGGGCAA--CCUG-GUGGGAGAGUAG-GA-C-G-CCGCCG---G-GAC--------
>Cystobacter fuscus 1
----------C-CGGUGGCA-AU-GUC-GGA-G-GGGU-CCCAC-CCGUUC--CCAUCCCGAACACGGAAGUUAAG-CCCUCC-AGAG-CC-GAUGGUA-CU-CCGCGGGAAA--CCGC-GCGGGAGAGUAG-GU-C-G-CUGCCG---G-AU---------
>Campylobacter coli 1
------UYY-G-CUGUGACU-AU-ACA-GAU-G-UGGA-AACGC-CUUGCU--CCAUCCCGAACCAAGAAGCUAAG-CACAUC-GUGG-GU-GAUGAUA-CU-AUGCC-UUAUU--GGCAGGGGGAAAGUAG-CU-C-A-UUGCGG---A-C----------
>Campylobacter jejuni 1
------UYY-G-CUGUGACU-AU-AUA-GAU-G-UGGA-AACGC-CUUGCU--CCAUCCCGAACCAAGAAGCCAAG-CACAUC-GUGG-GU-GAUGAUA-CU-AUGCC-UUAUU--GGCAGGGGGAAAGUAG-CU-C-A-UUGCGG---A-C----------
>Campylobacter jejuni 3
------AUG-U-CCGUGAUU-AU-ACA-GAU-G-UGGA-AACGC-CUUGCU--CCAUCCCGAACCAAGAAGCUAAG-CACAUC-GUGG-GU-GAUGAUA-CU-ACGCC-UUACU--GGCAGGGGGAAAGUAG-CU-C-A-UUGCGG---A-CUU--------
>Wolinella succinogenes 1
UCCCUUUUU-C-UCGUGCCU-AU-AGA-GGA-G-AGGC-UACAC-CCAGCU--CCAUUCCGAACCUGGCAGUUAAG-CUCUCC-AUCG-CC-GAUAAUA-CU-GCAUCUUUC---AGGU-GUGGAAACGUAG-GU-G---GUGCGG---G-AGGGGGAUAAC
>Helicobacter hepaticus 1
UCCCUUUUU-C-UUGUGUUU-AU-AGA-GAG-A-AGGC-AACAC-CCAGCU--CCAUUCCGAACCUGGCAGUUAAG-CUUCUC-UUCG-CC-GAUGAUA-CU-GCAUCUUUC---AGGU-GUGGGAAUGUAG-GU-C-G-AUGCAG---G-GAUAGGGAAA-
>Helicobacter pylori 3
UCCCUUUUC-C-UUGUGCCU-UU-AGA-GAA-G-AGGA-ACUAC-CCAGUUAACCAUUCCGAACCUGGAAGUCAAG-CUCUUC-AUCG-CU-GAUAAUA-CU-GCUUUUUUC---AAGA-GUGGGAAUGUAG-GU-C-G-GUGCAG---G-GAUAGGGAAAU
>Helicobacter pylori 2
UCCCUUUUC-C-UUGUGCCU-UU-AGA-GAA-G-AGGA-ACUAC-CCAGUUAACCAUUCCGAACCUGGAAGUCAAG-CUCUUC-AUCG-CU-GAUAAUA-CU-GCUCUUUUC---AAGA-GUGGGAAUGUAG-GU-C-G-GUGCAG---G-GAUAGGGAAAU
>Thiovulum sp. 1
----UUUGG-U-UGGUGAUU-AC-AGA-GAA-A-AGGU-CACAC-UCAGCU--CCAUUUCGAACCUGAAAGUUAAG-CUUUUC-UUCG-UC-GAUAAUA-CU-GCCCCCUAC---GGGG-GUGGGACGGUAG-AU-C-G-UUGCCA---A-CCAUU------
>Acidithiobacillus ferrooxidans 1
------UGU-C-UGGCGGCC-AU-AGC-GCA-G-UGGA-ACCAC-CCCUUC--CCAUCUCGAACAGGACCGUGAAA-CGCUGC-AGCG-CC-UAUGAUA-GU-UGAGGGUCU---CCCU-CCGCGAAAGUCG-GU-C-A-CCGCCA---G-AC---------
>Acidithiobacillus ferrooxidans 2
------UGC-C-UGGUGGCC-AU-AGC-GAG-C-GGGA-ACCAC-CCGAUC--CCAUUCCGAACUCGGAAGUGAAA-ACGCUU-AGCG-CC-GAUGAUA-GU-AUGGGGUCU---CCCU-AUGCGAAAGUAG-GA-C-A-CUGCCA---G-GCUU-------
>Acidithiobacillus ferrooxidans 3
------UGU-C-UGGCGGCC-AU-AGC-GCA-G-UGGA-ACCAC-CCCUUC--CCAUCUCGAACAGGACCGUGAAA-CGCUGC-AGCG-CC-UAUGAUA-GU-UGAGGGUCU---CCCU-CCGCGAAAGUCG-GU-C-A-CCGCCA---G-ACAC-------
>Acidithiobacillus ferrooxidans 3
------UGU-C-UGGCGGCC-AU-AGC-GCA-G-UGGA-ACCAC-CCCUUC--CCAUCUCGAACAGGACCGUGAAA-CGCUGC-AGCG-CC-UAUGAUA-GU-UGAGGGUCU---CCCU-CCGCGAAAGUCG-GU-C-A-CCGCCA---G-ACAC-------
>Acidithiobacillus thiooxidans 1
-----UUGU-C-UGGCGGCC-AU-AGC-GCA-G-UGGA-ACCAC-CCCUUC--CCAUCCCGAACAGGACCGUGAAA-CACUGC-AGCG-CC-UAUGAUA-GU-UGAGGGCCU---CCCU-CCGCGAAAGUCG-GU-C-A-CCGCCA---G-ACAC-------
>Acinetobacter calcoaceticus 1
-------GG-C-UGGCGACC-AU-AGC-AAG-A-GUGA-ACCAC-CUGAUC--CCUUCCCGAACUCAGAAGUGAAA-CCUCUU-CGCG-CU-GAUGGUA-GU-GNGGG-UUA----CCC-AUGUGAGAGUAA-GU-C-A-UCGCCA---G-CUU--------
>Acinetobacter sp. 1
--------G-C-UGGCGACA-AU-AGC-AAG-A-GUGA-ACCAC-CUGAUC--CCUUCCCGAACUCAGAAGUGAAA-CCUCUU-CGCG-CU-GAUGGUA-GU-GUGGC-GUUA---GCC-AUGUGAGAGUAA-GU-C-A-UCGCCA---G-CUU--------
>Aeromonas hydrophila 1
------UGC-C-UGGCGGCC-AU-AGC-GCC-G-UGGA-ACCAC-CUGAUC--CCAUGCCGAACUCAGAAGUGAAA-CGCGGU-AGCG-CC-GAUGGUA-GU-GUGGC-AUUU---GCC-AUGCGAGAGUAG-GA-C-A-CUGCCA---G-GCA--------
>Aeromonas media 1
------UGC-C-UGGCGGCC-AU-AGC-GCC-G-UGGA-ACCAC-CUGAUC--CCAUGCCGAACUCAGAAGUGAAA-CGCGGU-AGCG-CC-GAUGGUA-GU-GUGGC-AUUU---GCC-AUGUGAGAGUAG-GA-C-A-CUGCCA---G-GCAU-------
>Aeromonas salmonicida 1
------UGC-C-UGGCGGCC-AU-AGC-GCC-G-UGGA-ACCAC-CUGAUU--CCAUGCCGAACUCAGAAGUGAAA-CGCGGU-AGCG-CC-GAUGGUA-GU-GUGGC-AUUU---GCC-AUGUGAGAGUAG-GA-C-A-CUGCCA---G-GCAU-------
>Azotobacter vinelandii 1
------UGC-U-UGACGAUC-AU-AGA-GCG-U-UGGA-ACCAC-CUGAUC--CCAUCCCGAACUCAGCAGUGAAA-CGACGC-AUCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUAAGAGUAG-GU-C-A-UCGUCA---G-GCGC-------
>Beggiatoa alba 1
------UUC-U-UGGCGACC-AU-AGC-AAA-U-AGGA-ACCAC-CCGACC--CCAUCCCGAACUCGGUAGUGAAA-CUGUUC-UGCG-CC-GAUGAUA-GU-GUGGA-UACUC--UCC-AUGUGAAAGUAG-GU-U-A-UCGCCA---A-GAGC-------
>Buchnera aphidicola 1
------------UGGUAAAA-AU-AGU-GUA-G-UGGU-ACCAC-CUGAAU--CCAUUCCGAACUCAGAAGUGAAA-CGCUAU-AACG-CC-GAUGGUA-GU-ACGGGGCCU---CCCC-GUGUGAGAGUAG-GU-C-A-AAUCCA---G-GAA--------
>Buchnera aphidicola 2
------UGC-C-UGGUAAAA-AU-AGU-GUA-G-UGGU-ACCAC-CUGAAU--CCAUUCCGAACUCAGAAGUGAAA-CGCUAC-AACG-CC-AAUGGUA-GU-ACGGGGUCU---CCCC-GUGUGAGAGUAG-GU-A-U-CAGCCA---G-GCAA-------
>Buchnera aphidicola 3
------------UGGUAAAA-AU-AGU-GUU-A-UGGU-ACCAC-CUGAAA--CCAUGCCGAACUCAGAAGUGAAA-CAUUUC-AACG-CC-GAUGGUA-GU-GCAGGGUAU---CCCU-GUGUGAGAGUAG-GA-C-A-UUACCA---G-GUU--------
>Candidatus Portiera aleyrodidarum 1
------AGC-U-UGACGAAU-AU-AGU-UUG-U-GGGA-CCAAC-CUGAAA--CCAUUCCGAACUCAGAAGUUAAA-UCACCU-AACG-CC-UAUGGUA-GU-AUGAGGUUCU--CCUC-AUGUGAGAGUAG-GU-U-A-UCGUCA---G-GCUA-------
>Colwellia psychrerythraea 1
------UGU-U-UAGCGACA-AU-AGC-GCU-G-UGGU-CCCAC-CUGAUC--CCUUUCCGAACUCAGAAGUGAAA-CGCAGU-UGCG-CC-GAUGGUA-GU-GUGGG-AGUU---CCC-AUGUGAGAGUAG-GA-C-A-UUGCUA---A-ACUU-------
>Colwellia psychrerythraea 2
------UGU-C-UAGCGACA-AU-AGC-GCU-G-UGGU-CCCAC-CUGAUC--CCUUUCCGAACUCAGAAGUGAAA-CGCAGU-UGCG-CC-GAUGGUA-GU-GUGGG-AGUU---CCC-AUGUGAGAGUAG-GA-C-A-UUGCUA---G-AC---------
>Colwellia psychrerythraea 3
------UGC-U-UAGCGACA-AU-AGU-GCU-G-UAGA-CCCAC-CUGAUC--CCAUUCCGAACUCAGUAGUGAAA-CGCAGU-AGCG-CC-GAUGGUA-GU-GUGGG-AGUU---CCC-AUGUGAGAGUAG-GA-C-A-UUGCUA---A-GCAU-------
>Coxiella burnetii 1
------UUC-C-UGGCGGCC-AU-AGC-GAG-C-GGGC-CCCAC-CUGAUU--CCAUUCCGAACUCAGAAGUGAAA-ACGCUU-AGCG-CC-GAUGAUA-GU-GUGGG-UCU----CCC-AUGCGAAAGUAG-GU-C-A-CCGCCA---G-GUU--------
>Coxiella burnetii 2
------UUC-C-UGGCGGCC-AU-AGC-GAG-C-GGGC-CCCAC-CUGCUU--CCAUUCCGAACUCAGAAGUGAAA-ACGCUU-AAGGCCC-GAUGAUA-GU-GUGGG-UCU----CCC-AUGCGAAAGUAG-GU-C-A-CCGCCA---G-UUU--------
>Dichelobacter nodosus 1
------UUC-C-UGAUACCC-AU-AGA-GCU-G-UGGU-ACCAC-CUGAAU--CCAUGCCGAACUCAGAAGUGAAA-CGCAGC-AUCG-CC-GAUGGUA-GU-GUGAGGUCU---CCUC-AUGUGAGAGUAG-GA-C-A-GUAUCA---G-GUUU-------
>Ectothiorhodospira mobilis 1
-------UC-C-UGGCGGCC-AU-GGC-GAA-C-CGGA-ACCAC-CCGAUC--CCAUCUCGAACUCGGAAGUGAAA-CGGUUC-AGCG-CC-GAUGAUA-GU-GUGGGGCCU---CCCC-AUGUGAAAGUAG-GU-C-A-CUGCCA---G-GCAU-------
>Ectothiorhodospira shaposhnikovii 1
------UAC-C-UGGCGGCC-AU-GGC-GAA-C-CGGA-ACCAC-CCGAUC--CCAUCUCGAACUCGGAAGUGAAA-CGGUUC-AGCG-CC-GAUGAUA-GU-GUGGGGCCU---CCCC-AUGUGAAAGUAG-GU-C-A-CUGCCA---G-GCAC-------
>Erwinia carotovora 1
------UGC-C-UGGCGGCG-AU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GG-A-A-CUGCCA---G-GCAU-------
>Erwinia carotovora 2
-----UUAC-C-UGGCGGCG-AU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GG-A-A-CUGCCA---G-GUUU-------
>Escherichia coli 10
------UGU-C-UGGCGGCA-GU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCUC-AUGCGAGAGUAG-GG-A-A-CUGCCA---U-GCAU-------
>Esch_coli2::B
------UGC-C-UGGCGGCC-GU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCUC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-GCAU-------
>Escherichia coli 2
------UGC-C-UGGCGGCA-GU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCUC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-GCAU-------
>Escherichia coli 13
------UGC-C-UGGCGGCC-GU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCU-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-A----------
>Escherichia coli 8
------UGC-C-UGGCGGCC-UU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGGCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-GCAU-------
>Escherichia coli 6
------UGU-C-UGGCGGCA-GU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGACU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-ACAU-------
>Escherichia coli 11
------UGC-C-UGGCGGCA-GU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-GCAUCA-----
>Esch_coli5::B
------UGU-C-UGGCGGCC-AU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-ACAU-------
>Escherichia coli 4
------UGU-C-UGGCGGCA-GU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-ACAU-------
>Escherichia coli 3
------UGC-C-UGGCGGCA-GU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-GCAU-------
>Escherichia coli 14
------UGC-C-UGGCGGCC-GU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-ACAU-------
>Escherichia coli 15
------UGC-C-UGGCGGCC-GU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-GCAUC------
>Escherichia coli 1
------UGC-C-UGGCGGCC-GU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-GCAU-------
>Escherichia coli 5
------UGC-C-UGGCGGCC-UU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-GCAU-------
>Fluoribacter bozemanae 1
-------UC-C-UGGCGACC-AU-AGC-GGU-U-UGGA-ACCAC-CUGACU--CCAUCUCGAACUCAGAAGUGAAA-CGAACC-CGCG-CC-AAUGAUA-GU-GUGAGGUCU---CCUC-AUGUGAAAGUAG-GU-C-A-GCGCCA---G-GGU--------
>Grimontia hollisae 1
-----UUGC-U-UGGCGACC-AU-AGC-GCU-U-UGGA-CCCAC-CUGAUU--CCAUGCCGAACUCAGAAGUGAAA-CAGAGC-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCUU-------
>Haemophilus aegyptius 1
--------U-C-UGGCGGCG-AU-AGU-GCG-G-UGGA-CCCAC-CUGAGA--CCAUACCGAACUCAGAAGUGAAA-CGCUGU-AAUG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GG-C-A-CCGCCA---G-GU---------
>Haemophilus influenzae 1
--------C-C-UGGCGGCG-AU-AGU-GCG-G-UGGA-CCCAC-CUGAGA--CCAUACCGAACUCAGAAGUGAAA-CGCUGU-AAUG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GG-C-A-CCGCCA---G-G----------
>Haemophilus influenzae 6
--------C-C-UGGCGGCG-AU-AGU-GCG-G-UGGA-CCCAC-CUGAGA--CCAUACCGAACUCAGAAGUGAAA-CGCUGU-AAUG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GG-C-A-CCGCCG---G-G----------
>Haemophilus influenzae 4
--------C-U-UGGCGGCG-AU-AGU-GCG-G-UGGA-CCCAC-CUGAGA--CCAUACCGAACUCAGAAGUGAAA-CGCUGU-AAUG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GG-C-A-CCGCCA---G-G----------
>Halorhodospira halophila 1
------UGC-C-UGGCGACC-AU-AGC-GAG-C-GGGA-ACCAC-CCGAUC--CGAUGCCGAACUCGGCAGUGAAA-CCGCUC-AGCG-CC-GAUGGUA-GU-GCGAC-CACGCU-GUC-GUGCGAGAGUAG-GU-C-A-UCGCCA---G-GCCC-------
>Halothiobacillus neapolitanus 1
-------GC-C-UGGUGUCC-AU-AGA-GCG-G-UGGA-ACCAC-CUGUUC--CCAUCCCGAACACAGAAGUGAAA-CGCCGC-AUCG-CC-GAUGAUA-GU-GUGGGGUCU---CCCC-AUGUGAAAGUAG-GU-C-A-ACGCCA---G-GCUC-------
>Idiomarina loihiensis 1
------UGU-C-UGGCGGCC-AU-AGC-GGU-G-UGGC-ACCAC-CUGAAU--CCAUUCCGAACUCAGAAGUGAAA-CACACC-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GU-C-A-CCGCCA---G-ACU--------
>Idiomarina loihiensis 2
------UGU-C-UGGCGGCC-AU-AGC-GGU-G-UGGC-ACCAC-CUGAAU--CCAUUCCGAACUCAGAAGUGAAA-CACACC-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GU-C-A-CCGCCA---G-ACUACAA----
>Legionella dumoffii 1
-------UC-C-UGGCGACC-AU-AGC-GGU-U-UGGA-ACCAC-CUGAUU--CCAUCUCGAACUCAGAAGUGAAA-CGAACC-CGCG-CC-AAUGAUA-GU-GUGAGGUCU---CCUC-AUGUGAAAGUAG-GU-C-A-UCGCCA---G-GGU--------
>Legionella longbeachae 1
-------UC-C-UGGUGACU-AU-AGC-GGU-U-UGGA-ACCAC-CUGAAU--CCAUCUCGAACUCAGAAGUGAAA-CGAACA-UGCG-CC-AAUGAUA-GU-GUGAGGCUU---CCUC-AUGUGAAAGUAG-GU-C-A-UCGCCA---G-GGU--------
>Legionella pneumophila 1
-------UC-U-UGGCGACU-AU-AGC-GAU-U-UGGA-ACCAC-CUGAUA--CCAUCUCGAACUCAGAAGUGAAA-CAUUUC-CGCG-CC-AAUGAUA-GU-GUGAGGCUU---CCUC-AUGCGAAAGUAG-GU-C-A-UCGCCA---G-GAU--------
>Legionella pneumophila 2
-------UC-C-UGGCGACU-AU-AGC-GAU-U-UGGA-ACCAC-CUGAUA--CCAUCUCGAACUCAGAAGUGAAA-CAUUUC-CGCG-CC-AAUGAUA-GU-GUGAGGCUU---CCUC-AUGCGAAAGUAG-GU-C-A-UCGCCA---G-GGU--------
>Legionella pneumophila 3
-------UC-C-UGGCGACU-AU-AGC-GAU-U-UGGA-ACCAC-CUGAUA--CCAUCUCGACCUCAGAAGUGAAA-CAUUUC-CGCG-CC-AAUGAUA-GU-GUGAGGCUU---CUUC-AUGCGAAAGUAG-GU-C-A-UCGCCA---G-GGU--------
>Listonella anguillarum 1
------UGC-C-UGGCGACC-AU-AGU-GUU-G-UGGA-CCCAC-CUGAUU--CCAUGCCGAACUCAGAAGUGAAA-CACAAC-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCAU-------
>Listonella pelagia 1
------UGC-U-UGGCGACC-AU-AGC-GUU-G-UGGA-CCCAC-CUGAUU--CCAUGCCGAACUCAGAAGUGAAA-CGCAAU-AGCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCAU-------
>Mannheimia succiniciproducens 1
--------C-C-UGGCGGCG-AU-AGU-GCA-G-UGGU-CCCAC-CUGAAU--CCAUGCCGAACUCAGAAGUGAAA-CGCUGU-UAUG-CC-GAUGGUA-GU-GUGGGGUAU---CCCC-AUGUGAGAGUAG-GU-C-A-CCGCCA---G-G----------
>Mannheimia succiniciproducens 2
--------C-C-UGGCGGCG-AU-AGU-GCA-G-UGGU-CCCAC-CUGAAU--CCAUGCCGAACUCAGAAGUGAAA-CGCUGU-UAUG-CC-GAUGGUA-GU-GUGGGGCAU---CCCC-AUGUGAGAGUAG-GU-C-A-CCGCCA---G-G----------
>Mannheimia succiniciproducens 3
------------UGGCAGCG-AU-AGU-GCA-G-UGGA-CCCAC-CUAAUU--CCAUGCCGAACUUAGAAGUGAAA-CGCUGU-UACG-CC-GAUGGUA-GU-GUGGGGCUU---CCCC-AUGUGAGAGUAG-GU-C-A-CUGCCA----------------
>Methylococcus capsulatus 1
-------GC-C-UGGCGGCC-AG-AGC-GAG-C-GGGA-ACCAC-CCGAUC--CCAUCCCGACCUCGGAAGUGAAA-CCGCUU-AGCG-CC-GAUGAUA-GU-GCAG--AAUAC---CU-GUGCGAAAGUAG-GG-A-A-CUGCCA---G-GCUC-------
>Methylococcus capsulatus 2
-------NY-U-UGGUGACC-AU-AGC-GAG-C-GUGA-CCCAC-CCGAUC--CCAUCCCGAACUCGGAAGUGAAA-CCGCUU-AGUG-CC-GAUGAUA-GU-GUGGCAAUU---UGCC-AUGCGAAAGUAG-GG-A-A-UUGCMA---A-AN---------
>Methylococcus capsulatus 3
-------GC-C-UGGCGGCC-AG-AGC-GAG-C-GGGA-ACCAC-CCGAUC--CCAUCCCGACCUCGGAAGUGAAA-CCGCUU-AGCG-CC-GAUGAUA-GU-GCAAG-AAUA---CCU-GUGCGAAAGUAG-GG-A-A-CUGCCA---G-GCUC-------
>Methylomicrobium agile 1
-------GC-U-UGGUGGCC-AU-AGC-GAG-C-GUGA-ACCAC-CCGAUC--CCAUCCCGAACUCGGAAGUGAAA-CCGCUU-AGCG-CC-GAUGAUA-GU-GCGACAGGU---UGUC-GUGCGAAAGUAG-GG-A-A-UUGUMA---A-GCNN-------
>Methylomicrobium album 1
------UGC-U-UGGUGACC-AU-AGC-GAG-C-GUGA-ACCAC-CCGAUC--CCAUCCCGAACUCGGCAGUGAAA-CCGCUU-AGCG-CC-AAUGAUA-GU-GCGACAGGU---UGUC-GUGCGAAAGUAG-GG-A-A-UCGCCA---A-GCUU-------
>Methylomicrobium clara 1
-------GU-U-UGGGGACA-AU-AGC-GGU-U-UGGA-ACCAC-CCCUUC--CCAUCUCGAACAGGGCCGUGAAA-CGAACU-UGCG-CC-AAUGAUA-GU-GUACU-CUU----CGU-AUGCGAAAGUAG-GU-C-A-UCCCCA---G-GCU--------
>Methylomonas methanica 1
-------NC-U-UGGUGACC-AU-AGC-GAG-C-GUGR-ACCAC-CCGAUC--CCAUCCCGAACUCGGAAGUGAAA-CCGCUU-UGCG-CC-GAUGAUA-GU-GUGGCAGUU---UGCC-AUGUGAAAGUAG-GU-C-A-UCGCMA---A-GN---------
>Methylomonas rubra 1
-------GC-U-UGGUGACC-AU-AGC-AAG-C-GUGA-ACCAC-CCGAUC--CCAUCCCGAACUCGGAAGUGAAA-CCGCUU-AGCG-CC-GAUGAUA-GU-GUGGCAGGU---UGCC-AUGUGAAAGUAG-GU-C-A-UCGCMA---A-GCUN-------
>Moritella marina 1
------UGU-U-UGGUGACC-AU-AGU-GUU-G-UGGU-ACCAC-CUGACU--CCAUUCCGAACUCAGUAGUGAAA-CGUAAU-AACG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GU---A-UCGCCA---G-GCA--------
>Pasteurella multocida 1
-----UAUC-U-UGGCGGCG-AU-AGU-GCA-G-UGGA-CCCAC-CUAACU--CCAUGCCGAACUUAGAAGUGAAA-CGCUGU-AACG-CC-GAUGGUA-GU-GUGGGGCUU---CCCC-AUGUGAGAGUAG-GA-C-A-CCGCCA---G-GU---------
>Pasteurella multocida 2
-----UAUC-U-UGGCGGCG-AU-AGU-GCA-G-UGGA-CCCAC-CUAAUU--CCAUGCCGAACUUAGAAGUGAAA-CGCUGU-AACG-CC-GAUGGUA-GU-GUGGGGCUU---CCCC-AUGUGAGAGUAG-GA-C-A-CCGCCA---G-GU---------
>Photobacterium angustum 1
------UGC-U-UGGCGACC-AU-AGC-GUU-A-UGGA-CCCAC-CUGAUC--CCAUGCCGAACUCAGUAGUGAAA-CGUAAU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCAU-------
>Photobacterium damselae 1
------UGC-C-UGGCGACC-AU-AGC-GUU-G-UGGU-CCCAC-CUGAAU--CCAUGCCGAACUCAGAAGUGAAA-CGCAGC-AGCG-UC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCAU-------
>Photobacterium damselae 2
------UGC-U-UGGCGACC-UU-AGC-GCU-G-UGGU-CCCAC-CUGAAU--CCAUGCCGAACUCAGAAGUGAAA-CGCAGC-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCAU-------
>Photobacterium leiognathi 1
------UGC-U-UGGCGACC-AU-AGC-GUU-A-UGGA-CCCAC-CUGAUC--CCAUGCCGAACUCAGUAGUGAAA-CGUAAU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCAU-------
>Photobacterium profundum 1
-------GU-C-UGGCGACC-AU-AGC-GCU-G-UGGC-UCCAC-CUGAUC--CCAUGCCGAACUCAGAAGUGAAA-CGCAGU-UGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GG-C-A-UCGCCA---G-GCG--------
>Photobacterium profundum 2
-------GU-C-UGGCGACC-AU-AGC-GCU-G-UGGC-UCCAC-CUGAUC--CCAUGCCGAACUCAGAAGUGAAA-CGCAGU-UGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GG-C-A-UCGCCA---G-GCC--------
>Photobacterium profundum 3
-----UUGU-C-UGGCGACC-AU-AGC-GCU-G-UGGC-UCCAC-CUGAUC--CCAUGCCGAACUCAGAAGUGAAA-CGCAGU-UGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GG-C-A-UCGCCA---G-G----------
>Photobacterium sp. 1
------UGC-U-UGGCGACC-AU-AGC-GUU-A-UGGA-CCCAC-CUGAUC--CCUUGCCGAACUCAGUAGUGAAA-CGUAAU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCAU-------
>Photorhabdus luminescens 1
------UGC-C-UGGCGGCG-AU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGCAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GA-C-A-CUGCCA---G-GC---------
>Photorhabdus luminescens 2
------UGC-C-UGGCGGCG-AU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGCAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GA-C-A-CUGCUA---G-GC---------
>Photorhabdus luminescens 3
------UGU-C-UGGCGGCG-AU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGCAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GG-A-A-CUGCCA---G-AC---------
>Plesiomonas shigelloides 1
------UGC-C-UGGCGGCC-AU-AGU-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCUGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GG-A-A-CUGCCA---G-GCAU-------
>Proteus vulgaris 1
------UGU-C-UGGCGGCC-AU-AGC-GCA-G-UGGU-CCCAC-CUGAUC--CCAUGCCGAACUCAGAAGUGAAA-CGUUGU-AGCG-CC-GAUGAUG-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GG-A-A-CUGCCA---G-GCAU-------
>Pseudomonas aeruginosa 1
------UGC-U-UGACGAUC-AU-AGA-GCG-U-UGGA-ACCAC-CUGAUC--CCUUCCCGAACUCAGAAGUGAAA-CGACGC-AUCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GU-C-A-UCGUCA---A-GCUC-------
>Pseudomonas aeruginosa 2
------UGC-U-UGACGAUC-AU-AGA-GCG-U-UGGA-ACCAC-CUGAUC--CCUUCCCGAACUCAGAAGUGAAA-CGACGC-AUCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GU-C-A-UCGUCA---A-GCUC-------
>Pseudomonas aeruginosa 3
------UGC-U-UGACGAUC-AU-AGA-GCG-U-UGGA-ACCAC-CUGAUC--CCUUCCCGAACUCAGAAGUGAAA-CGACAC-AUCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GU-C-A-UCGUCA---A-GCUC-------
>Pseudomonas denitrificans 1
------UGC-U-UGACGACC-AU-AGA-GCA-U-UGGA-ACCAC-CUGAUC--CCAUUCCGAACUCAGCAGUGAAA-CGAUGC-AUCG-CC-GAUGGUA-GU-GUGGGGCUU---CCCC-AUGUGAGAGUAG-GU-C-A-UCGUCA---A-GCGC-------
>Pseudomonas fluorescens 1
------UUC-U-UGACGACC-AU-AGA-GCG-U-UGGA-ACCAC-CUGAUC--CCAUCCCGAACUCAGAAGUGAAA-CGAUGC-AUCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GU-C-A-UCGUCA---A-GAUU-------
>Pseudomonas fluorescens 2
------UUC-U-UGACGACC-AU-AGA-GCG-U-UGGA-ACCAC-CUGAUC--CCAUCCCGAACUCAGAAGUGAAA-CGAUGC-AUCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GU-C-A-UCGUCA---A-GAU--------
>Pseudomonas fluorescens 3
------UUC-U-UGACGACC-AU-AGA-GCA-U-UGGA-ACCAC-CUGAUC--CCAUCCCGAACUCAGUAGUGAAA-CGAUGC-AUCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GU-C-A-UCGUCA---A-GAUU-------
>Pseudomonas fluorescens 4
------UUC-U-UGACGACC-AU-AGA-GCA-U-UGGA-ACCAC-CUGAUC--CCAUCCCGAACUCAGCAGUGAAA-CGAUGC-AUCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GU-C-A-UCGUCA---A-GAUU-------
>Pseudomonas putida 1
------UUC-U-UGACGACC-AU-AGA-GCA-U-UGGA-ACCAC-CUGAUC--CCAUCCCGAACUCAGUAGUGAAA-CGAUGC-AUCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GU-C-A-UCGUCA---A-GAUU-------
>Pseudomonas putida 2
------UUC-U-UGACGACC-AU-AGA-GCA-U-UGGA-ACCAC-CUGAUC--CCAUCCCGAACUCAGCAGUGAAA-CGAUGC-AUCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GU-C-A-UCGUCA---A-GAUU-------
>Pseudomonas stutzeri 1
-------GC-C-UGGUGGCU-AU-GGC-GAG-G-AGGC-CUAAC-CCGAUC--CCAUCCCGAACUCGGCCGUUAAA-CUCCUC-AGUG-CC-GAUGGUA-CU-AUGUC-UUAA---GAC-CUGGGAGAGUAG-GU-C-G-UCGCCA---G-GCCU-------
>Pseudomonas stutzeri 2
------G-C-U-UGACGACC-AU-AGA-GCG-U-UGGA-ACCAC-CUGAUC--CCAUCCCGAACUCAGUAGUGAAA-CGACGC-AUCG-CC-GAUGGUA-GC-UGUGGGGUC---UCCCCAUGUGAGAGUAG-GU-C-A-UCGUCA---A-GCUC-------
>Pseudomonas syringae 1
------UUC-U-UGACGACC-AU-AGA-ACA-U-UGGA-ACCAC-CUGAUC--CCAUCCCGAACUCAGCAGUGAAA-CGAUGU-AUCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GU-C-A-UCGUCA---A-GAUU-------
>Pseudomonas syringae 2
------UUC-U-UGACGACC-AU-AGA-ACA-U-UGGA-ACCAC-CUGAUC--CCAUCCCGAACUCAGCAGUGAAA-CGAUGU-AUCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GU-U-A-UCGUCA---A-GAUU-------
>Pseudomonas syringae 3
--------C-U-UGACGACC-AU-AGA-GCA-U-UGGA-ACCAC-CUGAUC--CCAUCCCGAACUCAGUAGUGAAA-CGAUGU-AUCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GU-C-A-UCGUCA---A-G----------
>Pseudomonas syringae 4
--------C-U-UGACGACC-AU-AGA-GCA-U-UGGA-ACCAC-CUGAUC--CCAUCCCGAACUCAGCAGUGAAA-CGGUGU-AUCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GU-C-A-UCGUCA---A-G----------
>Salmonella enterica 1
------UGC-C-UGGCGGCA-CU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-GCAU-------
>Salmonella enterica 3
------UGC-C-UGGCGGCA-GU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-GCAU-------
>Salmonella enterica 4
------UGC-C-UGGCGGCA-GU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-GC---------
>Salmonella enterica 5
------UGC-C-UGGCGGCA-GU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-GCAU-------
>Salmonella enterica 6
------UGC-C-UGGCGGCA-CU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-GCAU-------
>Salmonella enterica 7
------UGU-C-UGGCGGCA-GU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-GCAU-------
>Salmonella enterica 8
------UGU-C-UGGCGGCA-GU-AGC-ACG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-ACAU-------
>Salmonella typhi 1
------------UGGCGGCA-CU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-GCAU-------
>Salmonella typhimurium 1
------UGC-C-UGGCGGCA-CU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-GCAU-------
>Salmonella typhimurium 2
------UGC-C-UGGCGGCC-GU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-GCAU-------
>Salmonella typhimurium 3
-------GU-C-UGGCGGCA-GU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-ACA--------
>Salmonella typhimurium 4
-------GC-C-UGGCGGCA-CU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-GCA--------
>Shewanella colwelliana 1
------UGU-C-UGGAAACC-AU-AGC-AUU-G-UGGC-ACCAC-CUGAUC--CCAUCCCGAACUCAGAAGUGAAA-CGCAAU-UGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GU-C-A-UUUCCA---G-GCGC-------
>Shewanella hanedai 1
------UGU-C-UGGAAACC-AU-AGC-AUU-G-UGGC-CCCAC-CUGAUC--CCAUCCCGAACUCAGAAGUGAAA-CGCAAU-CGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GU-C-A-UUUCCA---G-GCGC-------
>Shewanella oneidensis 1
------UGC-U-UGGUGACA-AU-AGC-AUU-G-UGGU-CCCAC-CUGAUC--CCAUCCCGAACUCAGAAGUGAAA-CGCAAU-CGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GU-C-A-UCGCCA---A-GCGC-------
>Shewanella oneidensis 2
------UGU-U-UGGUGACA-AU-AGC-AUU-G-UGGU-CCCAC-CUGAUC--CCAUCCCGAACUCAGAAGUGAAA-CGCAAU-CGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GU-C-A-UCGCCA---A-GCGC-------
>Shewanella putrefaciens 1
------UGU-C-UGGUGAUA-AU-AGC-AUU-G-UGGA-ACCAC-CUGAUC--CCAUCCCGAACUCAGAAGUGAAA-CGCAAU-UGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GU-C-A-UUGCCA---G-GCAU-------
>Shigella flexneri 1
------GC--C-UGGCGGCC-GU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-GCAU-------
>Shigella flexneri 2
------GU--C-UGGCGGCA-GU-UGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G-ACAU-------
>Shigella flexneri 3
----------C-UGGCGGCA-GU-UGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GG-A-A-CUGCCA---G------------
>Thiomicrospira pelophila 1
-------GC-U-UGGCGACC-AU-AGC-GGA-A-UGGA-ACCAC-CUGAUC--CCAUCUCGAACUCAGAAGUGAAA-CGUUCC-AGCG-CC-AAUGGUA-GU-GUGGGGUUU---CCCC-AUGCGAGAGUAG-GU-C-A-UCGCCA---A-GCU--------
>Thiomicrospira sp. 1
-------GC-U-UGGGGACA-AU-AGC-AAG-A-UGGA-ACCAC-CUGAUC--CCUUUCCGAACUCAGAAGUGAAA-CGUUUU-AGCG-CC-GAUGGUA-GU-GUGUC-AGUU---GGC-AUGUGAGAGUAG-GU-C-A-UCCCCA---A-GCU--------
>Thiothrix nivea 1
----UUUGC-C-UGGUGUCC-AU-AGA-GCA-C-UGGA-ACCAC-CUGAUC--CCAUCCCGAACUCAGAAGUGAAA-CGGUGC-AUCG-CC-GAUGGUA-GU-GUGGGGCCU---CCCC-AUGUGAGAGUAG-GU-C-A-ACGCCA---G-GCGC-------
>Thiothrix sp. 1
------UGC-C-UGGUGUCC-AU-AGA-GCA-C-UGGA-ACCAC-CUGAUC--CCAUCCCGAACUCAGAAGUGAAA-CGGUGC-AUCG-CC-GAUGGUA-GU-GUGGGGCCU---CCCC-AUGUGAGAGUAG-GU-C-A-ACGCCA---G-GCGC-------
>Vibrio aestuarianus 1
------UGC-U-UGGCGACC-AU-AGU-GUU-G-UGGA-CCCAC-CUGACU--CUAUGCCGAACUCAGAAGUGAAA-CGUAAU-AGCG-CC-GAUGGUA-GU-GUGGGGCUU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCA--------
>Vibrio alginolyticus 1
------UGC-C-UGGCGACC-AU-AGC-GUU-U-UGGA-CCCAC-CUGAUUU-CCAUGCCGAACUCAGAAGUGAAA-CGAAAU-AGCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCAU-------
>Vibrio cholerae 1
------UGC-U-UGGCGACC-AU-AGC-GUU-U-UGGA-CCCAC-CUGAUU--CCAUCCCGAACUCAGAAGUGAAA-CGAAAC-AGCG-UC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-AA-C-A-UCGCCA---G-GC---------
>Vibrio cholerae 2
------UGU-U-UGGCGACC-AU-AGC-ACU-U-UGGA-CCCAC-CUGAUU--CCAUCCCGAACUCAGAAGUGAAA-CGAAGU-AGCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GC---------
>Vibrio cholerae 3
------UGC-U-UGGCGACC-AU-AGC-GUU-U-UGGA-CCCAC-CUGAUU--CCAUCCCGAACUCAGAAGUGAAA-CGAAAC-AGCG-UC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-AA-C-A-UCGCCA---G-GC---------
>Vibrio cholerae 4
------UGC-C-UGGCGACC-AU-AGC-GUU-U-UGGA-UCCAC-CUGACU--CCAUUCCGAACUCAGAAGUGAAA-CGAAAU-AGCG-UC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-AA-C-A-UCGCCA---G-GCA--------
>Vibrio cincinnatiensis 1
------UGC-C-UGGCGACC-AU-AGC-GUU-U-UGGA-CCCAC-CUGAUU--CCAUGCCGAACUCAGUAGUGAAA-CGAAAC-AGCG-UC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-AA-C-A-UCGCCA---G-GCAU-------
>Vibrio diazotrophicus 1
------UGC-C-UGGCGACC-AU-AGC-GAU-U-UGGA-CCCAC-CUGAUU--CCAUGCCGAACUCAGAAGUGAAA-CGAAUU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCAU-------
>Vibrio fischeri 1
-----UUGC-U-UGGCGACC-AU-AGC-GUU-A-UGGA-CCCAC-CUGAUC--CCAUGCCGAACUCAGAAGUGAAA-CGUAAU-AGCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCUU-------
>Vibrio fischeri 2
------UGC-U-UAGCGACC-AU-AGC-GUU-A-UGGA-CCCAC-CUGAUC--CCAUGCCGAACUCAGAAGUGAAA-CGUAAU-AGCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCUA---G-GCU--------
>Vibrio fischeri 3
------UGC-C-UGGCGACC-AU-AGC-AUU-A-UGGA-CCCAC-CUGAUC--CCAUGCCGAACUCAGAAGUGAAA-CGUAAU-AGCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCAU-------
>Vibrio fluvialis 1
------UGC-C-UGGCGACC-AU-AGU-GUU-U-UGGA-CCCAC-CUGAUU--CCAUUCCGAACUCAGAAGUGAAA-CGAAAC-AGCG-UC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-AA-C-A-UCGCCA---G-GCAU-------
>Vibrio gazogenes 1
------UGC-C-UGGCGGCC-AU-AGU-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCUGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GG-A-A-CUGCCA---G-GCAU-------
>Vibrio harveyi 1
------UGC-C-UGGCGACC-AU-AGC-GAU-U-UGGA-CCCAC-CUGAUU--CCAUUCCGAACUCAGAAGUGAAA-CGAAUU-AGCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCAU-------
>Vibrio harveyi 2
------UGC-U-UGGCGACC-AU-AGC-GAU-U-UGGA-CCCAC-CUGAUCUUCCAUUCCGAACUCAGAAGUGAAA-CGAAUU-AGCG-CC-GAUGGUA-GU-GUGGGGCUU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCUU-------
>Vibrio logei 1
------UGC-U-UGGCGACC-AU-AGC-GUU-A-UGGA-CCCAC-CUGAUU--CCAUGCCGAACUCAGAAGUGAAA-CGUAAU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCAU-------
>Vibrio mediterranei 1
------UGC-U-UGGCGACC-AU-AGC-GUU-G-UGGA-CCCAC-CUGAUU--CCAUGCCGAACUCAGAAGUGAAA-CGCAAU-AGCG-CC-GAUGGUA-GU-GUGGGGCUU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCUU-------
>Vibrio metschnikovii 1
------UGC-C-UGGCGACC-AU-AGC-GUU-U-UGGA-CCCAC-CUGAUU--CCAUGCCGAACUCAGAAGUGAAA-CGAAAC-AGCG-UC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-AA-C-A-UCGCCA---G-GCAU-------
>Vibrio mimicus 1
------UGC-C-UGGCGACC-AU-AGC-GUU-U-UGGA-CCCAC-CUGAUU--CCAUUCCGAACUCAGAAGUGAAA-CGAAAC-AGCG-UC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-AA-C-A-UCGCCA---G-GCAU-------
>Vibrio natriegens 1
------UGC-C-UGGCGACC-AU-AGU-GUU-U-UGGA-CCCAC-CUGACUU-CCAUGCCGAACUCAGAAGUGAAA-CGAAAU-AGCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCAU-------
>Vibrio nereis 1
------UGC-C-CGGCGACC-AU-AGC-GCU-U-UGGA-CCCAC-CUGAUUU-CCAUGCCGAACUCAGAAGUGAAA-CGAAGU-AGCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GU-C-A-CCGCCA---G-GCAU-------
>Vibrio ordalii 1
------UGC-U-UGGUGAUC-AU-AGC-GUU-G-UGGA-CCCAC-CUGACU--CCAUGCCGAACUCAGAAGUGAAA-CACAAC-AGCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCUA---G-GCAU-------
>Vibrio parahaemolyticus 1
------UGC-U-UGGCGACC-AU-AGC-GUU-U-UGGA-CCCAC-CUGACU--CCAUUCCGAACUCAGAAGUGAAA-CGAAAU-AGCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCUU-------
>Vibrio parahaemolyticus 2
------UGC-U-UGGCGACC-AU-AGC-GUU-U-UGGA-CCCAC-CUGAUC--CCAUUCCGAACUCAGAAGUGAAA-CGAAAU-AGCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCUU-------
>Vibrio parahaemolyticus 3
------UAC-U-UGGCGACC-AU-AGC-ACU-U-UGGA-CCCAC-CUGACUU-CCAUUCCGAACUCAGAAGUGAAA-CGAAGU-AGCG-UC-GAUGGUA-GU-GUGGGGCUU---CCCC-AUGUGAGAGUAG-AA-C-A-UCGCCA---G-GUUC-------
>Vibrio parahaemolyticus 4
------UGC-U-UGGCGACC-AU-AGC-GUU-U-UGGA-CCCAC-CUGACU--CCAUUCCGAACUCAGAAGUGAAA-CGAAAU-AGCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GUUU-------
>Vibrio parahaemolyticus 5
------UGC-C-UGGCGACC-AU-AGU-GUU-U-UGGA-CCCAC-CUGAUU--CCAUUCCGAACUCAGAAGUGAAA-CGAAAU-AGCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCAU-------
>Vibrio parahaemolyticus 6
------UGC-C-UGGCGACC-AU-AGU-GUU-U-UG-A-CCCAC-CUGAUU--CCAUUCCGAACUCAGAAGUGAAA-CGAAAU-AGCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCAU-------
>Vibrio proteolyticus 1
------UGC-C-UGGCGACC-AU-AGC-GAU-U-UGGA-CCCAC-CUGAUU--CCAUGCCGAACUCAGUAGUGAAA-CGAAUU-AGCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCAU-------
>Vibrio sp. 1
------AGU-C-UGGAAACC-AU-AGC-AUU-G-UGGC-CCCAC-CUGAUC--CCAUCUCGAACUCAGAAGUGAAA-CGCAAU-CGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGUGAGAGUAG-GU-C-A-UUUCCA---G-GCGC-------
>Vibrio tubiashii 1
------UGC-U-UGGCGACC-AU-AGC-GUU-G-UGGA-CCCAC-CUGAUU--CCAUGCCGAACUCAGAAGUGAAA-CGCAAU-AGCG-CC-GAUGGUA-GU-GUGGGGCUU---CCCC-AUGUGAGAGUAG-GA-C-A-UCGCCA---G-GCAU-------
>Vibrio vulnificus 1
-----UUGC-U-UGGCGACC-AU-AGC-GUU-U-UGGA-CCCAC-CUGAAU--CCAUUCCGAACUCAGAAGUGAAA-CGAAAU-AGCG-UC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-AA-C-A-UCGCCA---G-GCUU-------
>Vibrio vulnificus 2
-----UUGC-U-UGGCGACC-AU-AGC-GUU-U-UGGA-CCCAC-CUGAUU--CCAUUCCGAACUCAGAAGUGAAA-CGAAAU-AGCG-UC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-AA-C-A-UCGCCA---G-GCUU-------
>Vibrio vulnificus 3
-----UUGC-U-UAGCGACC-AU-AGC-GCU-U-UGGA-CCCAC-CUGAUU--CCAUUCCGAACUCAGAAGUGAAA-CGAAGU-AGCG-CC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-GA-C-A-UUGCUA---G-GCU--------
>Vibrio vulnificus 4
-----UUGC-U-UGGCGACC-AU-AGC-GUU-U-UGGA-CCCAC-CUGAAU--CCAUUCCGAACUCAGAAGUGAAA-CGAAAU-AGCG-UC-GAUGGUA-GU-GUGGGGGUU---CCCC-AUGUGAGAGUAG-AA-C-A-UCGCCA---G-GCU--------
>Vibrio vulnificus 5
------UGC-C-UGGCGACC-AU-AGC-GUU-U-UGGA-CCCAC-CUGAAC--CCAUUCCGAACUCAGAAGUGAAA-CGAAAU-AGCG-UC-GAUGGUA-GU-GUGGGGUUU---CCCC-AUGUGAGAGUAG-AA-C-A-UCGCCA---G-GCAU-------
>Wigglesworthia glossinidia 1
------UUC-C-UGACAAUA-UU-AUC-GCG-A-UAGA-ACCAC-CUGAAU--CCAUACCGAACUCAGAAGUGAAA-UGUCGU-AGUU-CC-GAUGGUA-GU-GUGAGGUUU---CCUU-AUGUGAGAGUAG-GA-G-A-UUGUCA---G-GAAA-------
>Xanthomonas axonopodis 1
------UCC-C-UGGUGAAA-UU-AGC-GCU-G-UGGA-ACCAC-CCGAUC--CCAUCCCGAACUCGGAAGUGAAA-CGCAGC-UGCG-CC-GAUGGUA-GU-GUGGC-UCAA---GCC-AUGCGAGAGUAG-GU-C-A-UCGCCA---G-GGGC-------
>Xanthomonas campestris 1
------UCC-C-UGGUGAAA-UU-AGC-GCU-G-UGGA-ACCAC-CCGAUC--CCAUCCCGAACUCGGAAGUGAAA-CGCAGC-UGCG-CC-GAUGGUA-GU-GUGGC-UCAA---GCC-AUGCGAGAGUAG-GU-C-A-UCGCCA---G-GGGC-------
>Xanthomonas oryzae 1
------UCC-C-UGGUGAAA-UU-AGC-GCU-G-UGGA-ACCAC-CCGAUC--CCAUCCCGAACUCGGAAGUGAAA-CGCAGC-UGCG-CC-GAUGGUA-GU-GUGGC-UCAA---GCC-AUGCGAGAGUAG-GU-C-A-UCGCCA---G-GG---------
>Xylella fastidiosa 1
------UCC-C-UGGUGAUA-UU-AGC-GCU-G-UGGA-ACCAC-CCGAUC--CCAUCCCGAACUCGGAAGUGAAA-CGCAGC-UGCG-CC-GAUGGUA-GU-GUGGG-UCU----CCC-AUGCGAGAGUAG-GU-C-A-UUGCCA---G-GGUC-------
>Xylella fastidiosa 2
------UCC-C-UGGUGAUA-UU-AGC-GCU-G-UGGA-ACCAC-CCGAUC--CCAUCCCGAACUCGGAAGUGAAA-CGCAGC-UGCG-CC-GAUGGUA-GU-GUGGG-UCU----CCC-AUGCGAGAGUAG-GU-C-G-UUGCCA---G-GGUC-------
>Yersinia pestis 1
------UGC-C-UGGCGGCC-AU-AGC-GCG-G-UGGU-CCCAC-CUGAUC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GA-C-A-CUGCCA---G-GCAU-------
>Yersinia pestis 5
------UAC-C-UGGCGGCA-AU-AGC-GCG-G-UGGU-CCCAC-CUGACC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GA-C-A-CUGCCA---G-GUAU-------
>Yersinia pseudotuberculosis 1
------UGC-C-UGGCGGCC-AU-AGC-GCG-G-UGGU-CCCAC-CUGAUC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GA-C-A-CUGCCA---G-GCAU-------
>Yersinia pseudotuberculosis 3
------UGC-C-UGGCGGCC-AU-AGC-GCG-G-UGGU-CCCAC-CUGAUC--CCAUGCCGAAUUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGUCU---CCCC-AUGCGAGAGUAG-GA-C-A-CUGCCA---G-GCAU-------
>Yersinia pseudotuberculosis 5
------UGC-C-UGGCGGCC-AU-AGC-GCG-G-UGGU-CCCAC-CUGAUC--CCAUGCCGAACUCAGAAGUGAAA-CGCCGU-AGCG-CC-GAUGGUA-GU-GUGGGGGCU---CCCC-AUGCGAGAGUAG-GA-C-A-CUGCCA---G-GCAU-------
>Thermotoga maritima 1
----AUCCC-C-GGGUGCCG-AU-ACU-GGG-GCGGGA-AACAC-CCGGUU--CCAUUCCGAACCCGGCCGUUAAG-CCGCCC-UGGG-CC-GAUGGUA-GUAUGGGGGCAG---CCCC-AUGCGAGAGUAG-GU-A---GCGCCC---G-GGGAU------
>Thermotoga sp. 1
----AUCCC-C-GGGUGCCG-AU-ACU-GGG-GCGGGA-AACAC-CCGGUU--CCAUUCCGAACCCGGCCGUUAAG-CCGCCC-UGGG-CC-GAUGGUA-GUAUGGGGGCAG---CCCC-AUGCGAGAGUAG-GU-A---GCGCCC---G-GGGAU------
>Thermotoga sp. 2
-----UCCC-C-GGGUGCUG-AU-ACU-GGG-GCGGGA-AACAC-CCGGUU--CCAUUCCGAACCCGGCCGUUAAG-CCGCCC-UGGG-CC-GAUGGUA-GUAUGGGGGCAG---CCCC-AUGCGAGAGUAG-GU-A---GCGCCC---G-GGGUU------
>Thermotoga sp. 3
----AUCCC-C-GGGUGCCG-AU-ACU-GGG-GCGGGA-AACAC-CCGGUU--CCAUUCCGAACCCGGCCGUUAAG-CCGCCC-UGGG-CC-GAUGGUA-GUAUGGGGGCAA---CCCC-AUGCGAGAGUAG-GU-A---GCGCCC---G-GGGAU------
>Thermotoga petrophila 1
----AUCCC-C-GGGUGCCG-AU-ACU-GGG-GCGGGA-AACAC-CCGGUU--CCAUUCCGAACCCGGCCGUUAAG-CCGCCC-UGGG-CC-GAUGGUA-GUAUGGGGGUAG---CCCC-AUGCGAGAGUAG-GU-A---GCGCCC---G-GGGAU------
>Thermotoga neapolitana 1
-----UCCC-C-GGGUGCCG-AU-ACU-GGG-GCGGGA-AACAC-CCGGUU--CCAUUCCGAACCCGGCCGUUAAG-CCGCCC-UGGG-CC-GAUGGUA-GUAUGGGGGCAG---CCCC-AUGCGAGAGUAG-GU-A---GCGCCC---G-GGGAU------
>Thermotoga neapolitana 2
----AUCCC-C-GGGUGCCG-AU-ACU-GGG-GCGGGA-AACAC-CCGGUU--CCAUUCCGAACCCGGCCGUUAAG-CCGCCC-UGGG-CC-GAUGGUA-GUAUGGGGGCAG---CCCC-AUGCGAGAGUAG-GU-A---GCGCCC---G-GGGAU------
>Verrucomicrobium spinosum 1
--------U-C-CGGUGACG-AU-AGC-GAG-A-AGGU-CACAC-CCGUUC--CCAUACCGAACACGGAAGUGAAG-CUUCUC-AGCG-CC-GACGGUA-GU-UCGGGGCUGC--CCUC-CCGUGAGAGUAG-GA-C-G-UUGCCG---G-C----------
>Actinokineospora riparia 1
-------GUAA-CGGCGGUC-AU-AGC-GGU-G-GGGA-AACGC-CCGGUC--CCAUCCCGAACCCGGAAGCUAAG-CCCACC-AGCG-CC-GAUGGUA-CU-GCACUCGUGA--GGGU-GUGGGAGAGUAG-GA-C-G-CCGCCG---G-ACU--------
>Actinomadura madurae 1
------CGU-U-CGGUGGUU-UU-GGC-GAG-G-GGGA-AACAC-CCGGUC--CCAUUCCGAACCCGGAAGUUAAG-CCUCUC-AGCG-CC-GAUGGUA-CU-GCAUGGGAGA--CUGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---G-ACUU-------
>Amycolatopsis lactamdurans 1
-------GUUU-CGGUGGUU-AU-AGC-GGC-G-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCUGCC-AGCG-CC-GAUGGUA-CU-GCACUCGAAG--GGGU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACU--------
>Amycolatopsis mediterranei 1
-------GUUU-CGGUGGUU-UU-AGC-GUC-A-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCUGAC-AGCG-CC-GAUGGUA-CU-GCAACCGAAG--GGUU-GUGGGAGAGUAG-GA-C-A-CCGCCG---A-ACU--------
>Amycolatopsis methanolica 1
-------GUUU-CGGUGGUU-AU-GGC-GGU-A-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCUGCC-AGCG-CC-GAUGGUA-CU-GCACCCCCGC--GGGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---A-ACA--------
>Amycolatopsis orientalis 1
-------GUUU-CGGUGGUC-AU-AGC-GUC-A-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCUGAC-AGCG-CC-GAUGGUA-CU-GCAACCGAAG--GGUU-GUGGGAGAGUAG-GA-C-A-CCGCCG---G-ACU--------
>Arthrobacter globiformis 1
-------AU-UACGGCGGUC-AU-AGC-GUG-G-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-ACCCAC-AGCG-CC-GAUGGUA-CU-GCACCCGGGA--GGGU-GUGGGAGAGUAG-GU-C-A-CCGCCG---G-ACAC-------
>Arthrobacter globiformis 2
-------GU-UACGGCGGUC-AU-AGC-GUG-G-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-ACCCAC-AGCG-CC-GAUGGUA-CU-GCACCCGGGA--GGGU-GUGGGAGAGUAG-GU-C-A-CCGCCG---G-ACACU------
>Arthrobacter luteus 1
-------GU-UACGGCGGUC-AU-AGC-GAA-G-GGGA-AACGC-CCGGUC--CCAUACCGAACCCGGAAGCUAAG-CCCUUC-AGCG-CC-GAUGGUA-CU-GCCCUGAAGA--CGGG-GUGGGAGAGUAG-GA-C-G-CCGCCG---G-ACAAC------
>Arthrobacter oxydans 1
-------AU-UACGGCGGUC-AU-AGC-GUG-G-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-ACCCAC-AGCG-CC-GAUGGUA-CU-GCACCCGGGA--GGGU-GUGGGAGAGUAG-GU-C-A-CCGCCG---G-ACAC-------
>Arthrobacter polychromogenes 1
-------AU-UACGGCGGUG-AU-AGC-GUG-G-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-ACCCAC-AGCG-CC-GAUGGUA-CU-GCACCCGGGA--GGGU-GUGGGAGAGUAG-GU-C-A-CCGCCG---G-ACAC-------
>Brevibacterium helvolum 1
-------AU-UACGGCGGUC-AU-AGC-GUG-G-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-ACCCAC-AGCG-CC-GAUGGUA-CU-GCACCCGGGA--GGGU-GUGGGAGAGUAG-GU-C-A-CCGCCG---G-AAA--------
>Clavibacter michiganensis 1
-------GUUU-CGGCGGCC-AU-AGC-GAG-A-GGGA-AACGC-CCGGUC--ACAUUCCGAACCCGGAAGCUAAG-ACUCUC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-A-CCGCCG---G-ACU--------
>Bifidobacterium longum 1
------UUU-G-CGGCGGCC-AU-GGC-CCA-G-GUGA-GACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-GCCUGG-CACG-GC-GAUGGUA-CU-GCACCCGACA--GGGU-GUGGGAGAGUAG-CA-C-G-CCGCCG---C-AUC--------
>Bifidobacterium longum 2
------UUU-G-CGGCGGCC-AU-GGC-CCA-G-GUGA-GACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-GCCUGG-CACG-GC-GAUGGUA-CU-GCACCCGACA--GGGU-GUGGGAGAGUAG-CA-C-G-CCGCCG---C-AUCA-------
>Bifidobacterium longum 3
------UUU-G-CGGCGGCC-AU-GGC-CCA-G-GUGA-GACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-GCCUGG-CACG-GC-GAUGGUA-CU-GCACCCGACA--GGGU-GUGGGAGAGUAG-CA-C-G-CCGCCG---C-ACC--------
>Brevibacterium casei 1
-----UUUU-G-CGGUGGUG-AU-AGU-GGU-G-GGGA-AACGC-CCGGUUAACCGUUCCGAUCCCGGUAGCUAAG-CCCAUG-UAUG-CU-GAUGGUA-CU-GCAACUUGGU--GGUU-GUGGGAGAGUAA-GU-G-A-CUGCCG---C-AAU--------
>Brevibacterium linens 1
-----UUUU-G-CGGUGGUG-AU-AGU-GGU-G-GGGA-AACGC-CCGGUUAACCGUUCCGAUCCCGGUAGCUAAG-CCCAUU-CGCG-CU-GAUGGUA-CU-GCAACUUGGU--GGUU-GUGGGAGAGUAG-GU-G-A-CUGCCG---C-AAU--------
>Brevibacterium linens 2
-----UUUU-G-CGGUGGUG-AU-AGU-GGU-G-GGGA-AACGC-CCGGUUAACCGUUCCGAUCCCGGUAGCUAAG-CCCAUU-CGCG-CU-GAUGGUA-CU-GCAACUUGGU--GGUU-GUGGGAGAGUAA-GU-G-A-CUGCCG---C-AAU--------
>Cellulomonas biazotea 1
-------GU-UACGGCGGUC-AU-AGC-GAA-G-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCCUUC-AGCG-CC-GAUGGUA-CU-GCACUCGCCA--GGGU-GUGGGAGAGUAG-GA-C-G-CCGCCG---G-ACA--------
>Cellulosimicrobium cellulans 1
------GUU-A-CGGCGGUC-AC-AGC-GAA-G-GGGA-AACGC-CCGGUC--CCAUACCGAACCCGGAAGCUAAG-CCCUUC-AGCG-CC-GAUGGUA-CU-GCCCUGGAGA--CGGG-GUGGGAGAGUAG-GU-C-G-CCGCCG---G-ACA--------
>Corynebacterium diphtheriae 1
-----UGUG-U-UGGUGGUU-AU-UGU-GUC-G-GGGG-UACGC-CCGGUC--CCUUUCCGAACCCGGAAGCUAAG-CCCGAU-UGCG-CU-GAUGGUA-CU-GCACCUGGGA--GGGU-GUGGGAGAGUAG-GU-C-G-CCGCCA---A-CCU--------
>Corynebacterium diphtheriae 2
-----UGUG-U-UGGUGGUU-AU-UGU-GUC-G-GGGG-UACGC-CCGGUC--CCUUUCCGAACCCGGAAGCUAAG-CCCGAU-UGCG-CU-GAUGGUA-CU-GCACCUGGGA--GGGU-GUGGGAGAGUAG-GU-C-G-CUGCCA---A-CCU--------
>Corynebacterium efficiens 1
-----UGUG-U-CGGUGGUG-AU-AGU-AGC-A-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCUGGU-UACG-CU-GAUGGUA-CU-GCACUCGGGA--GGGU-GUGGGAGAGUAG-GU-G-A-CCGCCG---A-CC---------
>Corynebacterium glutamicum 1
-----UGUG-U-CGGUGGUG-AU-AGU-AGC-A-GGGA-AACGC-CCGGUC--CCUUUCCGAACCCGGAAGCUAAG-CCUGGU-UACG-CU-GAUGGUA-CU-GCACUCGGGA--GGGU-GUGGGAGAGUAG-GU-U-A-CCGCCG---A-CC---------
>Corynebacterium glutamicum 2
-----UGUG-U-CGGUGGUG-AU-AGU-AGC-A-GGGA-AACGC-CCGGUC--CCUUUCCGAACCCGGAAGCUAAG-CCUGGU-UACG-CU-GAUGGUA-CU-GCACUCGGGA--GGGU-GUGGGAGAGUAG-GU-U-A-CCGCCG---A-CCA--------
>Corynebacterium jeikeium 1
-----UUUG-U-CGGUGGUUGUU-AGC-GGU-G-GGGU-CACGC-CCGGUC--CCUUUCCGAACCCGGAAGCUAAG-CCUACC-UGCG-CU-GAUGGUA-CU-GCACCUGGGA--GGGU-GUGGGAGAGUAA-GU-C-A-CCGCCG---G-C----------
>Corynebacterium jeikeium 2
-----UUUG-U-CGGUGGUUGUU-AGC-GGU-G-GGGU-CACGC-CCGGUC--CCUUUCCGAACCCGGAAGCUAAG-CCUACC-UGCG-CU-GAUGGUA-CU-GCACCUGGGA--GGGU-GUGGGAGAGUAA-GU-C-A-CCGCCG---A-C----------
>Corynebacterium variabile 1
-----UUUG-U-CGGUGGUG-UU-AGC-GGU-G-GGGU-CACGC-CCGGUC--CCUUUCCGAACCCGGAAGCUAAG-CCUGCC-UGCG-CC-GAUGGUA-CU-GCACCUGGGA--GGGU-GUGGGAGAGUAG-GA-C-C-CCGCCG---G-CAU--------
>Corynebacterium xerosis 1
-----CGUG-U-CGGUGGUU-AU-AGC-GGU-G-GGGU-CACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCCACC-UGCG-CC-GAUGGUA-CU-GCACCUGGGA--GGGU-GUGGGAGAGUAG-GU-C-A-CCGCCG---G-CCAA-------
>Corynebacterium xerosis 2
-----CGUG-U-CGGUGGUUA-U-AGC-GGU-G-GGGU-CACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCCACC-UGCG-CC-GAUGGUA-CU-GCACCUGGGA--GGGU-GUGGGAGAGUAG-GU-C-A-CCGCCG---G-CCA--------
>Crossiella cryophila 1
------GUU-U-CGGUGGUC-AU-AGC-GGU-U-GGGG-AACAC-CCGGUC--CCAUUCCGAACCCGGUAGUUAAG-CCUUCC-AGCG-CC-GAUGGUA-CU-GCACUCGUGA--GGGU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Curtobacterium citreum 1
------GUU-C-CGGUGGUG-AU-AGC-GAG-A-GGGA-AACGC-CCGGUG--AGAUUCCGAACCCGGAAGCUAAG-CCUCUC-AGCG-CC-GAUGGUA-CU-GCAAGGGGGA--CCUU-GUGGGAGAGUAG-GA-C-G-CCGCCG---G-ACUCA------
>Dactylosporangium aurantiacum 1
-------GU-UACGGCGGCC-AU-AGC-GGA-G-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCCUCC-AGCG-CC-GAUGGUA-CU-GCACCCGAGA--GAGU-GUGGGAGAGUAG-GA-C-G-CCGCCG---G-ACAA-------
>Frankia sp. 1
------GGU-C-CGGCGGCC-AU-AGC-GGU-G-GGUA-AAUGC-CCGGUC--UCAUUCCGAACUCGGAAGCUAAG-CCCUCC-AGCG-CC-GAUGGUA-CU-GCACCCGAGA--GAGU-GUGGGAGAGUAG-GA-C-G-CCGCCG---G-ACCA-------
>Frankia sp. 2
------GUU-U-CGGUGGUU-UU-GGC-GAA-G-GGGA-AACGC-CCGGUC--UCAUUCCGAACCCGGAAGCUAAG-CUCUUC-AGCG-CC-GAUGGUA-CU-GCAUGGGGGA--CUGU-GUGGGAGAGUAG-GA-C-G-CCGCCG---G-ACU--------
>Frankia sp. 3
------GUU-U-CGGUGGUU-UU-GGC-GAA-G-GGGA-AACGC-CCGGUC--UCAUUCCGAACCCGGAAGCUAAG-CUCUUC-AGCG-CC-GAUGGUA-CU-GCAUGGGGGA--CUGU-GUGGGAGAGUAG-GA-C-G-CCGCCG---G-AC---------
>Geodermatophilus obscurus 1
------GUU-U-CGGUGGUC-AU-GGC-GAG-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUUUC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-AA-C-A-CCACCG---A-ACA--------
>Herbidospora cretacea 1
-------GU-UACGGCGGUU-AU-GGC-GGA-G-GGGA-AACAC-CCGGUU--ACAUUCCGAACCCGGAAGUUAAG-CCCUCC-AGCG-CC-GAUGGUA-CU-GCACCGGGGA--CGGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---G-ACA--------
>Kibdelosporangium aridum 1
------GUU-A-CGGUGGUU-AU-AGC-GAA-G-AGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CUCUUC-AGCG-CC-GAUGGUA-CU-GCACUGGGUA--CGGU-GUGGGAGAGUAG-GU-C-G-CCGCCG---U-AAU--------
>Kutzneria albida 1
------GUU-U-CGGUGGUG-UU-GGC-GGA-G-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCCUCC-UGCG-CC-GAUGGUA-CU-GCACUCGUGA--GGGU-GUGGGAGAGUAG-GA-C-G-CUGCCG---A-ACA--------
>Kutzneria viridogrisea 1
-------GUUU-CGGUGGUG-UU-GGC-GGA-G-GGGA-AACGC-CCGGUC--CCACAUCGAACCCGGAAGCUAAG-CCCUCC-UGCG-CC-GAUGGUA-CU-GCACUCGUGA--GGGU-GUGGGAGAGUAG-GA-C-G-CUGCCG---A-ACA--------
>Leifsonia aquatica 1
-------GU-UUCGGCGGCC-AU-AGC-GAG-A-GGGA-AACGC-CCGGUU--AUAUUCCGAACCCGGAAGCUAAG-ACUCUC-UGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-A-CCGCCG---G-ACU--------
>Leifsonia xyli 1
------GUU-U-CGGCGGCC-AU-AGC-GAG-A-GGGA-AACGC-CCGGUC--ACAUUCCGAACCCGGAAGCUAAG-ACUCUC-UGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-A-CCGCCG---G-ACUU-------
>Microbacterium testaceum 1
-------GU-UUCGGCGGCC-AU-AGC-GAG-A-GGGA-AACGC-CCGGUU--AUAUUCCGAACCCGGAAGCUAAG-CCUCUC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-A-CCGCCG---G-ACU--------
>Micrococcus luteus 1
-------GU-UACGGCGGUC-AU-AGC-GUG-G-GGGA-AACGC-CCGGUU--CCAUUCCGAACCCGGAAGCUAAG-GCCCAC-AGCG-CC-GAUGGUA-CU-GCAACCGGGA--GGUU-GUGGGAGAGUAG-GU-C-G-CCGCCG---G-ACAA-------
>Micrococcus luteus 2
-------GU-C-UGGCGGCC-AU-AGC-GUG-G-GGGA-AACGC-CCGGUC--CCAUCCCGAACCCGGAAGCUAAG-CCCCAU-AGCG-CC-GAUGGUA-CU-GCAACCGGGA--GGUU-GUGGGAGAGUAG-GU-C-G-CCGCCG---G-ACA--------
>Micrococcus luteus 3
-------UU-U-CGGUGGUC-AU-AGC-GUG-G-GGGA-AACGC-CCGGUC--CCAUGCCGAACCCGGUAGCUAAG-WCCCAC-AGCG-CU-GAUGGUA-CU-GCACUCGGUA--GGGU-GUGGGAGAGUAA-GU-C-A-CCGCCG---G-AAU--------
>Micrococcus luteus 4
-------GUUA-CGGCGGCU-AU-AGC-GUG-G-GGGA-AACGC-CCGGCC--GUAUAUCGAACCCGGAAGCUAAG-CCCCAU-AGCG-CC-GAUGGUU-ACUGUAACCGGGA--GGUU-GUGGGAGAGUAG-GU-C-G-CCGCCG---U-GA---------
>Microtetraspora glauca 1
-------GU-UACGGCGGUU-AU-AGC-GGU-A-GGGA-AACAC-CCGGUU--ACAUUCCGAACCCGGAAGUUAAG-CCUUCC-AGCG-CC-GAUGGUA-CU-GCACUGGGGA--CGGU-GUGGGAGAGUAG-GA-C-G-CCGCCG---G-AAAU-------
>Mycobacterium avium 1
--------U-UACGGCGGCC-AC-AGC-GAC-A-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCUGUC-AGCG-CC-GAUGAUA-CU-GCCC--AUAC----GG-GUGGAAAAGUAG-GA-C-A-CCGCCG---A-ACA--------
>Mycobacterium bovis 1
-------GU-UACGGCGGCC-AC-AGC-GGC-A-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCUGCC-AGCG-CC-GAUGAUA-CU-GCCC--CUACC---GG-GUGGAAAAGUAG-GA-C-A-CCGCCG---A-ACA--------
>Mycobacterium bovis 2
--------U-UACGGCGGCC-AC-AGC-GGC-A-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCUGCC-AGCG-CC-GAUGAUA-CU-GCCC--CUCC----GG-GUGGAAAAGUAG-GA-C-A-CCGCCG---A-ACA--------
>Mycobacterium bovis 3
--------U-UACGGCGGCC-AU-AGC-GGC-A-GGGA-AACGC-CCGGUC--CCAUGCCGAACCCGGAAGCUAAG-CCUGCC-AGCG-CC-GAUGAUA-CU-GCCCC-UCC----GGG-GUGGAAAAGUAG-GG-C-A-CCGCCG---A-ACA--------
>Mycobacterium flavescens 1
-------GU-UACGGCGGUCAGU-AGC-GGC-A-GGGA-AACGC-CCGGAC--CCAUCCCGAACCCGGAAGCUAAG-CCUGCC-AGCG-CC-AAUGGUA-CU-GCCC--AGCAC---GG-GUGGAAAAGUAG-GG-C-G-CCGCCG---A-ACAC-------
>Mycobacterium leprae 1
-------GU-UACGGUGGCC-AC-AGC-GAU-A-GGGA-AACGC-CCGGUC--CCAUACCGAACCCGGAAGCUAAG-CCUGUC-AGCG-CC-GAUGAUA-CU-GCCC--AUUC----GG-GUGGAAAAGUAG-GA-C-A-CUGCCG---A-ACA--------
>Mycobacterium leprae 2
-------GU-UACGGUGGCC-AC-AGC-GAU-A-GGGA-AACGC-CCGGUC--CCAUACCGAACCCGGAAGCUAAG-CCUGUC-AGCG-CC-GAUGAUA-CU-GCCC--AUUC----GG-GUGGAAAAGUAG-GA-C-A-CUGCCG---A-ACAU-------
>Mycobacterium nonchromogenicum 1
-------GU-UACGGCGGAA-AU-AGC-GAC-A-GGRA-AACGC-CCGGUC--CCAUCCCGAACCCGGAAGCUAAG-CCUGUC-AGCG-CC-GAUGAUA-CU-GCCC--ACAC----GG-GUGGAAAAGUAG-GA-C-A-CCGCCG---A-ACA--------
>Mycobacterium phlei 1
-------GU-UACGGCGGUCAAU-AGC-GGC-A-GGGA-AACGC-CCGGUC--CCAUCCCGAACCCGGAAGCUAAG-CCUGCC-AGCG-CC-AAUGAUA-CU-ACCC--UUCC----GG-GUGGAAAAGUAG-GA-C-A-CCGCCG---A-ACAU-------
>Mycobacterium phlei 2
-------GU-UACGGCGGUCAAU-AGC-GGC-A-GGGA-AACGC-CCGGUC--CCAUCCCGAACCCGGAAGCUAAG-CCUGCC-AGCG-CC-AAUGAUA-CU-GCCC--UCACC---GG-GUGGAAAAGUAG-GA-C-A-CCGCCG---A-ACAC-------
>Mycobacterium smegmatis 1
-------GU-UACGGCGGUCCAU-AGC-GGC-A-GGGA-AACGC-CCGGUC--CCAUCCCGAACCCGGAAGCUAAG-CCUGCC-AGCG-CC-GAUGAUA-CU-ACCC--UUCC----GG-GUGGAAAAGUAG-GA-C-A-CCGCCG---A-ACAU-------
>Mycobacterium smegmatis 2
-------GU-UACGGCGGUCCAU-AGC-GGC-A-GGGA-AACGC-CCGGUC--CCAUCCCGAACCCGGAAGCUAAG-CCUGCC-AGCG-CC-GAUGAUA-CU-ACCC--AUCC----GG-GUGGAAAAGUAG-GA-C-A-CCGCCG---A-ACAC-------
>Mycobacterium smegmatis 3
-------GU-UACGGCGGUCCAU-AGC-GGC-A-GGGA-AACGC-CCGGUC--CCAUCCCGAACCCGGAAGCUAAG-CCUGCC-AGC--CC-GAUGAUA-CU-ACCC--UUCC----GG-GUGGAAAAGUAG-GA-C-A-CCGCCG---A-ACAC-------
>Mycobacterium tuberculosis 1
--------U-UACGGCGGCC-AC-AGC-GGC-A-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCUGCC-AGCG-CC-GAUGAUA-CU-GCCC--CUCC----GG-GUGGAAAAGUAG-GA-C-A-CCGCCG---A-ACA--------
>Mycobacterium tuberculosis 2
-------GU-UACGGCGGCC-AC-AGC-GGC-A-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCUGCC-AGCG-CC-GAUGAUA-CU-GCCC--CUCC----GG-GUGGAAAAGUAG-GA-C-A-CCGCCG---A-ACA--------
>Mycobacterium tuberculosis 3
-------GU-UACGGCGGCC-AC-AGC-GGC-A-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCUGCC-AGCG-CC-GAUGAUA-CU-GCCC--CUCC----GG-GUGGAAAAGUAG-GA-C-A-CCGCCG---A-ACAU-------
>Mycobacterium tuberculosis 4
--------U-UACGGCGGCC-AU-AGC-GGC-A-GGGA-AACGC-CCGGUC--CCAUGCCGAACCCGGAAGCUAAG-CCUGCC-AGCG-CC-GAUGAUA-CU-GCCCC-UCC----GGG-GUGGAAAAGUAG-GG-C-A-CCGCCG---A-ACA--------
>Nocardia asteroides 1
------GUU-A-CGGCGGUU-AU-AGC-GGU-G-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-GCCACC-UGCG-CC-GAUGGUA-CU-GCACUCGACA--GGGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---G-AACA-------
>Nocardia farcinica 1
-------UU-A-CGGCGGUC-AU-AGC-GGU-G-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCUGCC-AGCG-CC-GAUGGUA-CU-GCACUCGACA--GGGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---G-AACAUCC----
>Nocardioides albus 1
-------GU-UACGGCGGCC-AU-AGC-GAA-G-GGGA-AAUAC-CCGGUC--CCAUCCCGAACCCGGAAGUCAAG-CCCUUC-AGCG-CC-GAUGGUA-CU-GCAACCGAGA--GGCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---G-ACA--------
>Nocardiopsis dassonvillei 1
-------UU-G-UGGUGGUU-AU-UGC-UGG-A-GGGU-CACAC-CCGGUC--UCUUUCCGAACCCGGUCGUUAAG-UCUCUU-UGCG-CU-GAUGGUA-CU-GCCCUGUGG---UGGG-GUGGGAGAGUAG-GU-C-G-CUGCCA---C-GGU--------
>Oerskovia turbata 1
-------GU-UACGGCGGUC-AU-AGC-GAG-A-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCUCUC-AGCG-CC-GAUGGUA-CU-GCCCUGGAGA--CGGG-GUGGGAGAGUAG-GU-C-G-CCGCCG---G-ACA--------
>Pimelobacter simplex 1
-------GU-UACGGCGGCC-AU-AGC-GGC-G-GGGA-AACAC-CCGGUC--CCAUGCCGAACCCGGAAGUUAAG-CCUGCC-AGCG-CC-GAUGGUA-CU-GCAACCGAGA--GGCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---G-ACA--------
>Planobispora longispora 1
-------GU-UACGGCGGUU-AU-AGC-GGA-G-GGGA-AACAC-CCGGUU--ACAUUCCGAACCCGGAAGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-CU-GCACUCGGGA--GGGU-GUGGGAGAGUAG-GU-C-G-CCGCCG---G-ACA--------
>Prauserella rugosa 1
-------GUUU-CGGUGGUG-AU-AGC-GGU-A-GGGG-UACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCUGCC-AGCG-CC-GAUGGUA-CU-GCACUCGUAG--GGGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---A-ACU--------
>Propionibacterium acnes 1
-------UU-UCCGGUGGCC-AU-AGU-GGA-A-GGGA-AACAC-CCGGUC--CCAUUCCGAACCCGGUCGUUAAG-CCUUCC-AACG-CU-GAUGGUA-CU-GCACGAGGGA--UCGU-GUGGGAGAGUAA-GA-C-G-CUGCCG---G-AAUAC------
>Pseudonocardia compacta 1
------GUG-U-CGGUGGUC-AU-GGC-GGA-G-GGGA-AACGC-CCGGUC--CCAUCCCGAACCCGGAAGCUAAG-CCCUCC-AGCG-CC-GAUGGUA-CU-GCACUCGUCA--GGGU-GUGGGAGAGUAG-GU-C-G-CCGCCG---A-CAU--------
>Pseudonocardia halophobica 1
-------UG-U-CGGUGGUC-AU-UGC-GGA-G-GGGG-AACGC-CCGGUC--CCAUCCCGAACCCGGAAGCUAAG-CCCUCC-AGCG-CC-GAUGGUA-CU-GCACUCGCCA--GGGU-GUGGGAGAGUAG-GU-C-G-CCGCCG---A-CA---------
>Pseudonocardia hydrocarbonoxydans 1
------GUG-U-CGGUGGUU-AU-GGC-GGA-G-GGGG-AACGC-CCGGUC--CCAUCCCGAACCCGGAAGCUAAG-CCCUCC-AGCG-CC-GAUGGUA-CU-GCACCUGUCA--GGGU-GUGGGAGAGUAG-GU-C-G-CCGCCG---A-CAU--------
>Pseudonocardia thermophila 1
------GUG-U-CGGUGGUU-AU-GGC-GGA-G-UGGG-AACGC-CCGGUC--CCAUCCCGAACCCGGAAGCUAAG-CACUCC-AGCG-CC-GAUGGUA-CU-GCACUCGCUA--GGGU-GUGGGAGAGUAG-GU-C-G-CCGCCG---A-CA---------
>Renibacterium salmoninarum 1
-------GU-UACGGCGGCC-AU-AGC-GUG-G-GGGA-AACGC-CCGGAC--CCAUCUCGAACCCGGAAGCUAAG-ACCCAC-AGCG-CC-CAUGGUA-CU-GCACUCGCGA--GGGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---G-ACA--------
>Rhcoc_fas1::B
-------GU-UACGGCGGCC-AU-AGC-GGA-G-GGGA-AACCGCCCGGUC--CCAUUCCGAA-CCGGAAGCUAAG-CCCUCC-AGCG-CC-GAUGGUA-CU-GCACUCGACA--GGGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---A-ACU--------
>Rhodococcus erythropolis 1
-------GU-UACGGCGGUC-AU-AGC-GAA-G-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCCUUC-AGCG-CC-GAUGGUA-CU-GCACUCGACA--GGGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---G-ACAC-------
>Rhodococcus erythropolis 2
-------GU-UACGGCGGUC-AU-AGC-GAA-G-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCCUUC-AGCG-CC-GAUGGUA-CU-GCACUCGACG--GGGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---A-ACA--------
>Rhodococcus fascians 1
-------GU-UACGGCGGCC-AU-AGC-GGA-G-GGGA-AACCGCCCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCCUCC-AGCG-CC-GAUGGUA-CU-GCACUCGACA--GGGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---A-ACU--------
>Rhodococcus fascians 2
-------GU-UACGGCGGCC-AU-AGC-GGA-G-GGGA-AACCGCCCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCCUCC-AGCG-CC-GAUGGUA-CU-GCACUCGACA--GGGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---A-ACA--------
>Rhodococcus rhodochrous 1
-------GU-UACGGCGGCC-AU-AGC-GAC-A-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCUGUC-UGCG-CC-GAUGGUA-CU-GCACUCGACA--GGGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---A-ACA--------
>Saccharomonospora azurea 1
------GUU-U-CGGUGGUU-AU-AGC-GGU-G-GGGA-CACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCCACC-AGCG-CC-GAUGGUA-CU-GCACUCGAAG--GAGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---A-ACA--------
>Saccharomonospora cyanea 1
------GUU-U-CGGUGGUC-AC-AGC-GGUAG-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCCACC-AGCG-CC-GAUGGUA-CU-GCACCCGAAG--GGGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---A-ACA--------
>Saccharomonospora glauca 1
------GUU-U-CGGUGGUA-AU-AGC-GGU-G-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCCACC-AGCG-CC-GAUGGUA-CU-GCACCCGCCG--GGGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---A-ACA--------
>Saccharomonospora sp. 1
------GUU-U-CGGUGGUA-AU-AGC-GGU-G-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCCACC-AGCG-CC-GAUGGUA-CU-GCACCCGCCG--GGGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---A-ACA--------
>Saccharopolyspora erythraea 1
------GUUGU-CGGUGGCG-AU-AGC-GGU-G-GGGA-AACGC-CCGGUC--CCUUUCCGAACCCGGAAGCUAAG-CCUGCC-AGCG-CC-GAUGGUA-CU-GUACUCGAUA--GGGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---ACAAU--------
>Saccharopolyspora gregorii 1
------AUUGU-CGGUGGUU-UU-AGC-GGA-GCGGGG-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCCUCC-AGCG-CC-GAUGGUA-CU-GCACUCGAUA--GGGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---ACAAU--------
>Saccharopolyspora hirsuta 1
------GUUGU-CGGUGGCG-AU-GGC-GGG-G-AGGG-UCCGC-CCGGUC--CCAUUCCGAACCCGGUAGCUAAG-CUCCCC-AGCG-CU-GAUGGUA-CU-GCACUCGACA--GGGU-GUGGGAGAGUAA-GA-C-A-CCGCCG---ACACA--------
>Saccharopolyspora hordei 1
------GUUGU-CGGUGGCG-AU-AGC-GGG-G-AGGG-UCCGC-CCGGUC--CCAUUCCGAACCCGGUAGCUAAG-CUCCCC-AGCG-CU-GAUGGUA-CU-GCACUCGGUA--GGGU-GUGGGAGAGUAA-GA-C-A-CCGCCG---ACACA--------
>Saccharopolyspora rectivirgula 1
------GUUGU-CGGUGGCG-AC-AGC-GGG-G-AGGG-UCCGC-CCGGUC--CCAUACCGAACCCGGAAGCUAAG-CUCCCC-AGCG-CC-GAUGGUA-CU-GCACCCGGUG--GGGU-GUGGGAGAGUAG-GA-C-A-CCGCCG---ACACA--------
>Saccharothrix australiensis 1
------GUU-U-CGGUGGUU-AU-GGC-GGA-G-GGGG-AACAC-CCGGUC--CCAUUCCGAACCCGGUAGUUAAG-CCUUCC-AGCG-CC-GAUGGUA-CU-GCACUCGUGA--GGGU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Saccharothrix mutabilis 1
------GUU-U-CGGUGGUC-AU-GGC-GGA-G-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-UCCUCC-AGCG-CC-GAUGGUA-CU-GCAUGCGUGA--GCGU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces ambofaciens 1
-------GUUU-CGGUGGUC-AU-AGC-GUU-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUUAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces avermitilis 1
---------UU-CGGUGGUC-AU-AGC-GUG-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUUAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces avermitilis 2
---------UU-CGGUGAUC-AU-AGC-GUG-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUUAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-UCGCCG---A-ACA--------
>Streptomyces avermitilis 3
---------UU-CGGUGGUC-AU-AGC-GUG-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUUAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACU--------
>Streptomyces avermitilis 4
---------UU-CGGUGGUC-AU-AGC-GUG-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUUAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces avermitilis 5
---------UU-CGGUGGUC-AU-AGC-GUG-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUUAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces brasiliensis 1
-------GUUU-CGGUGGUC-AU-AGC-GUG-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUUAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-A-CCGCCG---A-ACA--------
>Streptomyces cinereus 1
-------GUUU-CGGUGGUC-AU-AGC-GUG-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUCAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-A-CCGCCG---A-ACA--------
>Streptomyces coelicolor 1
------UGUUU-CGGUGGUC-AU-AGC-GUA-G-GGGA-AACGC-CCGGUU--ACAUUUCGAACCCGGAAGCUAAG-CCUUAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces coelicolor 2
-------GUUU-CGGUGGUC-AU-AGC-GUA-G-GGGA-AACGC-CCGGUU--ACAUUUCGAACCCGGAAGCUAAG-CCUUAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-AC---------
>Streptomyces coelicolor 3
-------GUUU-CGGUGGUC-AU-AGC-GUA-G-GGGA-AACGC-CCGGUU--ACAUUUCGAACCCGGAAGCUAAG-CCUUAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACU--------
>Streptomyces coelicolor 4
------GGUUU-CGGUGGUC-AU-AGC-GUA-G-GGGA-AACGC-CCGGUU--ACAUUUCGAACCCGGAAGCUAAG-CCUUAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces coelicolor 5
-------GUUU-CGGUGGUC-AU-AGC-GUA-G-GGGA-AACGC-CCGGUU--ACAUUUCGAACCCGGAAGCUAAG-CCUUAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A------------
>Streptomyces coelicolor 6
--------UUU-CGGUGGUC-AU-AGC-GUA-G-GGGA-AACGC-CCGGUU--ACAUUUCGAACCCGGAAGCUAAG-CCUUAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces diastaticus 1
-------GUUU-CGGUGGUC-AU-UGC-GUU-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUUUC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces griseus 1
-------GUUU-CGGUGGUC-AU-AGC-GUU-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUUUC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces griseus 2
-------GUUU-CGGUGGUC-AU-AGC-GUG-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUUAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACU--------
>Streptomyces griseus 3
-------GUUU-CGGUGGUC-AU-UGC-GUU-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUUUC-AGCG-CC-GAUGGUA-CU-UCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces lividans 1
-------GUUU-CGGUGGUC-AU-AGC-GUA-G-GGGA-AACGC-CCGGUU--ACAUUUCGAACCCGGAAGCUAAG-CCUUAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-AC---------
>Streptomyces nodosus 1
-------GUUU-CGGUGGUC-AU-AGC-GUG-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUCAG-AGCG-CC-CAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces nodosus 2
-------GUUU-CGGUGGUC-AU-AGC-GUG-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUCAG-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces nodosus 3
-------GUUU-CGGUGGUC-AU-ACC-GUG-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUCAU-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces nodosus 4
-------GUUU-CGGUGGUC-AU-AGC-AUG-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUCAU-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces purpureus 1
-------GUUU-CGGUGGUC-AU-AGC-GUU-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUUUC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-GCA--------
>Streptomyces rimosus 1
------UGUUU-CGGUGGUC-AU-AGC-GUU-A-GGGA-AACGC-CCGGUU--ACAUUUCGAACCCGGAAGCUAAG-CCUUUC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------ucaggggcgacgccggccgugccgccaccggccggcagucgguuuuucggcgguuaucgggugguauccggacaggggccccgcgguguggcgaaguguaguggccagguaaggucagggggcaucgucgguacguuccccacaggaggcccccggguggagguccaggagacgcgcguccagacggauc
>Streptomyces rimosus 2
-------GUUU-CGGUGGUC-AU-AGC-GUU-A-GGGA-AACGC-CCGGUU--ACAUUUCGAACCCGGAAGCUAAG-CCUUUC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces roseoverticillatus 1
-------GUUU-CGGUGGUC-AU-AGC-GUU-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUUUC-GACG-CC-GAUGGUA-CU-GCAUGGGGGA--CCGU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACAAU------
>Streptomyces sclerotialus 1
-------GUUU-CGGUGGUC-AU-AGC-GUG-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUUAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACAA-------
>Streptomyces sp. 1
-------GUUU-CGGUGGUC-AU-AGC-GUG-A-GGGA-AACGC-CCGGUU--ACAUCCCGAACCCGGAAGCUAAG-CCUCAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces sp. 2
-------GUUU-CGGUGGUC-AU-AGC-GUG-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUCAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces sp. 3
-------GUUU-CGGUGGUC-AU-AGC-GUG-A-GGGA-AACGC-CCGGUU--ACAUACCGAACCCGGAAGCUAAG-CCUCAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces sp. 4
-------GUUU-CGGUGGUC-AU-AGC-GUG-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUUAC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptomyces violaceus 1
-------GUUU-CGGUGGUC-AU-AGC-GUU-A-GGGA-AACGC-CCGGUU--ACAUUCCGAACCCGGAAGCUAAG-CCUUUC-AGCG-CC-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAG-GA-C-G-CCGCCG---A-ACA--------
>Streptosporangium roseum 1
-------GU-UACGGCGGUU-AU-GGC-GAA-G-GGGA-AACAC-CCGGUU--ACAUUCCGAACCCGGAAGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-CU-GCACCGGGGA--CGGU-GUGGGAGAGUAG-GU-C-G-CCGCCG---G-ACA--------
>Symbiobacterium thermophilum 1
--------UUU-GGGUGGCG-AU-GCC-GGA-G-GGGA-U-CAC-CCGUUC--CCAUUCCGAACACGGAAGUUAAG-CCCUCC-AGGG-CC-GAAGGUA-CU-CC----GCAA-------GGGGGAGAAUAG-GU-C-G-CUGCCC---A-AAC--------
>Symbiobacterium thermophilum 2
--------UUU-GGGUGGCG-AU-GCC-GGA-G-GGGA-U-CAC-CCGUUC--CCAUUCCGAACACGGAAGUUAAG-CCCUCC-AGGG-CC-GAAGGUA-CU-CC----GCAA-------GGGGGAGAAUAG-GU-C-G-CUGCCC---A-AAU--------
>Symbiobacterium thermophilum 3
-----GGUUUU-GGGUGGCG-AU-GCC-GGA-G-GGGA-U-CAC-CCGUUC--CCAUUCCGAACACGGAAGUUAAG-CCCUCC-AGGG-CC-GAAGGUA-CU-CC----GCAA-------GGGGGAGAAUAG-GU-C-G-CUGCCC---A-AAC--------
>Symbiobacterium thermophilum 4
--------UUU-GGGUGGCG-AU-GCC-GGA-G-GGGA-U-CAC-CCGUUC--CCAUUCCGAACACGGAAGUUAAG-CCCUCC-AGGG-CC-GAAGGUA-CU-CC----GCAA-------GGGGGAGAAUAG-GU-C-G-CUGCCC---A-AAC--------
>Thermomonospora chromogena 1
-------GUUU-CGGUGGUU-AU-AGC-GGU-G-GGGA-AACAC-CCGGUC--CCAUUCCGAACCCGGUAGUUAAG-CCCGCC-AGCG-CC-GAUGGUA-CU-GCACUGGUGA--CGGU-GUGGGAGAGUAG-GU-C-G-CCGCCG---G-ACG--------
>Tropheryma whipplei 1
-------GUCU-CGGGGGCA-AU-GGC-AAG-A-GGGA-AACGC-CUGGUU--ACAUUCCGAACCCAGAAGCUAAG-CCUCUU-AGCG-CU-GAUGGUA-CU-GCAGGGGGGA--CCCU-GUGGGAGAGUAA-GA-C-G-CCCCCG---G-GCU--------
>Anaerorhabdus furcosa 1
--------U-C-UGGUAAUG-AU-GGC-GAA-A-UGGU-CACAC-CUGUUC--CCAUACCGAACACAGAAGUUAAG-CAUUUC-AGCG-GC-GAUUAUA-GC-UAUG--CACGC---CA-UAGUGAAACUAG-CU-C-G-UUGCCA---G-GU---------
>Bacteroides capillosus 1
--------C-C-AGGUGGCU-AU-GGC-GGC-G-GUGU-UCCAC-CUCUUC--CCAUUCCGAACAGAGAAGUUAAG-CCUGUU-UGCG-CC-GACAAUA-CU-UAGA--UUUACU--UC-UAGGGAAUAUAG-GU-C-U-UCGCCA---A-UG---------
>Bacteroides fragilis 1
-----------------ACU-AU-AGC-AUC-A-GGGU-UCCAC-CUCUUC--CCAUUCCGAACAGAGAAGUUAAG-CCUGAU-CACG-CC-GAUGGUA-CU-GCG---UAA------CAGUGGGAGAGUAG-GU-A-G-UCGCCG---U-U----------
>Bacteroides fragilis 3
-----------------ACU-AU-AGC-AUC-A-GGGU-UCCAC-CUCUUC--CCAUUCCGAACAGAGAAGUUAAG-CCUGAU-CACG-CC-GAUGGUA-CU-GCG---UAA------CAGUGGGAGAGUAG-GU-A-G-UCGCCA---U-U----------
>Bacteroides fragilis 4
-----------------ACU-AU-AGC-AUC-A-GGGU-UCCAC-CUCUUC--CCAUUCCGAACAGAGAAGUUAAG-CCUGAU-CACG-CC-GAUGGUA-CU-GCG---UAA------CAGUGGGAGAGUAG-GU-A-G-UCGCCG---U-U----------
>Bacteroides fragilis 5
-----------------ACU-AU-AGC-AUC-A-GGGU-UCCAC-CUCUUC--CCAUUCCGAACAGAGAAGUUAAG-CCUGAU-CACG-CC-GAUGGUA-CU-GCG---UAA------CAGUGGGAGAGUAG-GU-A-G-UCGCCG---U-U----------
>Bacteroides fragilis 6
-------------GGUGACU-AU-AGC-AUC-A-GGGU-UCCAC-CUCUUC--CCAUUCCGAACAGAGAAGUUAAG-CCUGAU-CACG-CC-GAUGGUA-CU-GCG---UAA------CAGUGGGAGAGUAG-GU-A-G-UCGCCG---U-U----------
>Bacteroides fragilis 2
--------A-C-AGGUGACU-AU-AGC-AUC-A-GGGU-UCCAC-CUCUUC--CCAUUCCGAACAGAGAAGUUAAG-CCUGAU-CACG-CC-GAUGGUA-CU-GCG---UAA------CAGUGGGAGAGUAG-GU-A-G-UCGCCG---U-U----------
>Porphyromonas gingivalis 2
--------U-C-AGGUGGUU-AU-AAC-GUU-G-GGGA-UCCAC-CUCUUC--CCAUUCCGAACAGAGAAGUUAAG-CCCAAC-GGUG-CC-GAUGGUA-CU-GCG---UCA------CAGUGGGAGAGUAG-GA-C-G-CCGCCG----------------
>Porphyromonas gingivalis 1
-------CU-C-AGGUGGUU-AU-UAC-GUU-G-GGGA-UCCAC-CUCUUC--CCAUUCCGAACAGAGAAGUUAAG-CCCAAC-GGUG-CC-GAUGGUA-CU-GCG---UUA------UAGUGGGAGAGUAG-GA-C-G-CCGCCG---C-C----------
>Bacteroides thetaiotaomicron 1
--------U-C-AGGUGACU-AU-AGC-AUC-A-GGGU-UCCAC-CUCUUC--CCAUUCCGAACAGAGAAGUUAAG-CCUGAU-CACG-CC-GAUGGUA-CU-GCG---UAA------CAGUGGGAGAGUAG-GC-A-G-UCGCCG---C-CG---------
>Bacteroides veroralis 1
--------A-U-AGGUGGUU-AU-UGC-GUC-G-GGGU-UCCAC-CUCUUC--CCAUUCCGAACAGAGAAGUUAAG-CCCGUC-UGCG-CC-GAUGGUA-CU-GCA---AUGCAA---U-GCGGGAGAGUAG-GU-C-G-CCGCCU---U-C----------
>Empedobacter brevis 1
-------UU-UACGGCGGCC-AU-AGC-GGC-A-GGGA-AACGC-CCGGUC--CCAUUCCGAACCCGGAAGCUAAG-CCUGCC-AGCG-CC-GAUGGUA-CU-GCACUCGUGA--GGGU-GUGGGAGAGUAG-GU-C-A-CCGCCG---A-ACAC-------
>Flavobacterium hydatis 1
--------U-A-AGGUGGUU-AU-UGC-GGC-G-GGGC-UCGAC-CUCUUC--CCAUCCCGAACAGAGUAGUUAAG-CCCGCC-UGCG-CA-GAUGGUA-CU-GCA---GUUA-----U-GUGGGAGAGUAU-GU-C-G-UCGCCU---U-UC---------
>Flavobacterium johnsoniae 1
--------U-C-UGGUGGCG-AU-AGC-AGA-G-AGGU-CACAC-CCGUUC--CCAUGCCGAACACGGAAGUUAAG-UUCUCU-AGCG-CC-GAUGGUA-GU-GUGGACUUU---GUCC-CUGUGAGAGUAG-GA-C-G-UUGCCA---G-GC---------
>Flectobacillus major 1
--------G-UAUGGAGCCG-AU-AGG-ACU-G-GU-G-UUCAC-UCUUCC--CCAUCUCGAACAGAGUAGUUAAG-CCCAGU-ACCG-UU-GAUGAUA-CU-GCA---AUCACA---U-GCGGGAAAGCAA-CC-A-A-GCUCCA---A-CUC--------
>Flexibacter sp. 1
--------U-C-UGGUGACG-AU-GGC-GGA-G-GGGA-CACAC-CCGUUC--CCAUACCGAACACGGCCGUUAAG-CCCUCC-AGCG-CC-GAUGGUA-CU-UGCCCCGCAG--GGAG-CCGGGAGAGUAG-GA-C-G-UUGCCA---G-GU---------
>Pedobacter heparinus 1
-------UU-U-AGGUGCCU-AU-AUC-GGU-G-GUG--UCCAC-CUCUUC--CCAUUCCGAACAGAGAAGUUAAG-CCCACC-AGAG-CC-GAUGGUA-CU-GCGG--UAAC----AC-GUGGGAGAGUAG-GU-C-G-GUGCCA---A-AUC--------
>Saprospira grandis 1
------CUUCU-CGGUGGCCUAU-AGC-AGC-A-GGGA-A-CGC-CCGGAC--CCAUUCCGAACCCGGAAGCUAAG-CCUGCU-AACG-CU-GAUGGUA-CU-GCAACCGGGA--GGUU-GUGGGAGAGUAA-GA-A-A-CCGCCG---A-CAA--------
>Spirosoma sp. 1
-------AG-U-UGUGUAGU-UU--AG-GCG-G-GGUG-UUCAC-CUCUA---CCAUUUCGAACAGAGCCGUUAAG-CCCCGU-ACUG-CC-GAUGGUA-CU-GCU---GUCAUA---A-GCGGGAGAGUAG-G--A-A-GAUGCA---C-CU---------
>Chlorobium limicola 1
--------C-AACGGCGACA-AU--UC-CCU-U-GGUG-AACAC-CUCUUC--CCAUUCCGAACAGAGUCGUUAAG-CCAAGG-AGAG-CC-GAUGGUA-CU-GC----UUCAUU-----GCGGGAGAGUAG-GU-C-G-UCGCCG---U-GU---------
>Chlorobium tepidum 1
----------A-CGGCGACU-AU-AUC-CCU---GGUG-UUCAC-CUCUUC--CCAUUCCGAACAGAGUCGUUAAG-CCCAGG-AGAG-CC-GAUGGUA-CU-GC----UUUAUU-----GCGGGAGAGUAG-GU-C-G-UCGCCG---A-GU---------
>Prosthecochloris aestuarii 1
-------UU-A-CGGCGAUU-AU-AUC-CCA---GGUG-UUCAC-CUCUUC--CCAUUUCGAACAGAGUCGUUAAG-CCCUGG-UGAG-CC-GAUGGUA-CU-GC----GUUA-------GCGGGAGAGUAG-GU-C-G-UCGCCG---U-AUU--------
>Chlorobium limicola 2
-------CC-A-CGGCGACU-AU-AUC-CCU---GGUG-UUCAC-CUCUUC--CCAUUCCGAACAGAGUCGUUAAG-CCCAGG-AGAG-CC-GAUGGUA-CU-GC----UUUAUU-----GCGGGAGAGUAG-GU-C-G-UCGCCG---A-GU---------
>Chlorobium phaeobacteroides 1
--------C-UACGGCGACU-UU-UUC-CCA---GGUG-AUCAC-CUCUUC--CCAUUCCGAACAGAGUCGUUAAG-CCCUGG-AGAG-CC-GAUGGUA-CU-GC----UUCACU-----GCGGGAGAGUAG-GU-C-G-UCGCCG---A-U----------
>Leptospira interrogans 1
--------C-C-CGGUGACU-AU-AGA-GAG-A-GGGC-CACAC-CCGUUC--CCAUCCCGAACACGGAAGUUAAG-CCUCUC-AUCG-CU-GAUGGUA-CU-AUGUGGUUCG--CUGC-AUGGGAGAGUAG-GA-C-G-UUGCCG---G-GU---------
>Leptospira biflexa 1
--------C-C-UGGUGAUU-AU-GGA-GAG-A-AGGC-CAUAC-CCGUUC--CCAUUCCGAACACGGAAGUCAAG-CUUCUC-AUCG-CC-GAUGGUA-CU-AUUGGGUUCG--CUCA-AUGGGAGAGUAG-GA-C-A-UUGCCG---G-GU---------
>Treponema denticola 1
----------C-AGGUGGCC-AU-AGU-GGA-G-AGGU-AAUAC-CCGUUC--CCAUCCCGAACACGGAAGUCAAG-CUCUCU-UACG-CC-GAUGAUA-CU-GCU---GAUCA----A-GUGGGAAAGUAG-GA-U-G-CUGCCU---G-GC---------
>Leptospira interrogans 2
--------C-C-CGGUGACU-AU-AGA-GAG-A-GGGC-CACAC-CCGUUC--CCAUCCCGAACACGGAAGUUAAG-CCUCUC-AUCG-CU-GAUGGUA-CU-AUGUGGUUCG--CUGC-AUGGGAGAGUAG-GA-C-G-UUGCCG---G-GUUUU------
>Spirochaeta aurantia 1
--------C-C-UGGUGAUC-AU-AGC-GAA-G-AGGU-CCCAC-CCGUUC--CCAUCCCGAACACGGAAGUUAAG-CUCUUC-AGCG-CC-GAUGGUA-CU-GC----UAUU-------GCGGGAGAGUAG-GU-C-G-UCGCCA---G-GCU--------
>Borrelia burgdorferi 1
-------CC-C-UGGUGGUU-AA-AGA-AAA-G-AGGA-AACAC-CUGUUA--UCAUUCCGAACACAGAAGUUAAG-CUCUUA-UUCG-CU-GAUGGUA-CU-GCG---AGUU-----C-GCGGGAGAGUAG-GU-U-A-UUGCCA---G-GG---------