>BRACKETS
--((-((-((((((((----(((((-((-------((-((((-------------))))--))-----)))))--))----((((-(------(((((-(-((------))))))))----)))))---))))))-))))-)-)-----
>Sulfurococcus mirabilis 1
-----CC--ACCCGGCGAUAGUGAG-CGGGCA-ACAC-CCGGACUCAUCUCGAACCCGGAAGUAAAG-UCCCCU-ACGUUGGUAA-G-GCA--GUGGG-AUCC-GCAA-GGGCCUGCAGCCUUGCCAA-GCUGGGAU-GG-A-CAUU--
>Sulfolobus tokodaii 1
--GC-CC--ACUCGGCCAUAGUGGG-CGGGUA-ACAC-CCGGACUCGUCUCGAACCCGGAAGUUAAG-CCGCCC-ACGUUAGAAG-G-GCC--GUGGG-AUCC-GCGA-GGACCCGCAGCCCUUCUAA-GCCGAGAU-GG-G-CUUC--
>Desulfurococcus mobilis 1
-UGC-CC-GACCCGGCCAUAGUGGC-CGGGCA-ACAC-CCGGUCUCGUUUCGAACCCGGAAGUUAAG-CCGGCC-ACGUCAGAAC-G-GCC--GUGAG-GUCC-GAGA-GGCCUCGCAGCCGUUCUGA-GCUGGGAUCGG-G-CACC--
>Pyrobaculum aerophilum 1
--GCCCCUAACCCGGCCAUAGGCGC-CGGUGAUACGC-CCGGUCUCAUCA-GAACCCGGAAGCUAAGGCCGGCG-CCGCG-CUCG~G~GAGUACUGGG~CUCC~GCGA~GGGCCCGGGAAACCGGCGU~GCUGGGA~~GG~G~GGCUU~
>Sulfolobus acidocaldarius 3
--GC-CC~-ACCCGGUCAYAGUGAG-CGGGCA-ACAC-CCGGACUCAUUUCGAACCCGGAAGUUAAG-CCGCUC-ACGUU-AGUG~G~GGCC~GUGGA~UACC~GUGA~GGAUCCGCAGCCCCACUAA~GCUGGGAU~GG~G~UUUU~~
>Sulfolobus acidocaldarius 2
--GC-CC~-ACCCGGUCAUAGUGAG-CGGGUA-ACAC-CCGGACUCGUUUCGAACCCGGAAGUUAAG-CCGCUC-ACGUC-AGAG~G~GGCC~GUGGG~AUCC~GAGA~GGGCCCGCAGCCUCUCUGA~GCUGGGAU~GG~G~CGUU~~
>Pyrodictium occultum 1
UGGC-CC~GACCCGGCCAUAGCGGC-CGGGCA-ACAC-CCGGACUCAUGUCGAACCCGGAAGUUAAG-CCGGCC-GCGUU-GGGG~G~AUGCUGUGGG~GUCC~GCGA~GGCCCCGCAGCGCCCCCAA~GCCGGGAUCGG~G~CCG~~~
>Sulfolobus solfataricus 2
--GC-CC~-ACCCGGUCACAGUGAG-CGGGCA-ACAC-CCGGACUCAUUUCGAACCCGGAAGUUAAG-CCGCUC-ACGUU-AGUG~G~GGCC~GUGGA~UACC~GUGA~GGAUCCGCAGCCCCACUAA~GCUGGGAU~GG~G~UUUU~~
>Sulfolobus sp. 1
--GC-CC~-ACCCGGCCACAGUGAG-CGGGCA-ACAC-CCGGACUCAUUUCGAACCCGGAAGUUAAG-CCGCUC-ACGUU-GGUG~G~GGCC~GUGGA~UACC~GUGA~GGAUCCGCAGCCCCACUAA~GCUGGGAU~GG~G~CUUU~~
>Sulfolobus sp. 2
GCCC-CUA-ACCCGGCAAUAGGCGC-CGGUGCUACGC-CCGGUCUCUUCA~GAACCCGGAAGCUAAGGCCGGCG-CCGCG-GACG~G~GAGUACUGGG~GUCC~GCGA~GGCCCCGGGAAACCGCCGU~GCUGGGA~~GG~G~GGCUU~
>Methanococcus voltae 1
--UG-ACA-UAACGGUCAUAGCGGA-GGUGUA-ACAU-CCGAUCCCAUUCCGAUCUCGGAAAUUAAGCCCUCCA-GCGAU-UUCU-U-AAGUACUGCC------AUAC----GGUGGGAACAAGAUGACGCUGUU-A-GU-C-A-C---
>Methanococcus voltae 2
--UG-AUA-CGGCGGUCAUAGCGGA-GGUGUC-CCAU-CCGAUCCCAUUCCGAUCUCGGAAAUUAAGCCCUCCA-GCGAU-UUCU-U-AAGUACUGCC------AUAU----GGUGGGAACAAGAUGACGCUGCC-G-AU-C-A-C---
>Haloarcula vallismortis 1
------G--UAGCGGCCACAGCGGU-GGGGUU-CCUC-CCGUACCCAUCCCGAACACGGAAGAUAAGCCCACCA-GCGUU-CCGG-G-GAGUACUGGA-GUGC-GCGA-CCCUCUGGGAAACCGGGUUCGCCGCU-A-C--Y-Y-----
>Archaeoglobus fulgidus 1
--AU-GC--CGACGGUCAUAGGACG-GGGGAA-ACAC-CCGGACUCAUUCCGAACCCGGAAGUUAAGCCCCGUU-CCGUC-CCGC-A-CAGUACUGUG-UUCC-GAGA-GGGCACGGGAACUGCGGGA-ACCGUC-G-GCUU-------
>Haloarcula japonica 1
-----AG--UGGUGGCCAUAUCGGC-GGGGUU-CCUCCCCGUACCCAUCCUGAACACGGAAGAUAAGCCCGCCA-GCGU--CCGG-C-AAGUACUGGA-GUGC-GCGA-GCCUCUGGGAAAUCCGGUUCGCCGCC-A-CY-Y-------
>Haloarcula marismortui 2
-----UUA--GGCGGCCACAGCGGU-GGGGUUGCCUC-CCGUACCCAUCCCGAACACGGAAGAUAAGCCCACCA-GCGUU-CCAG-G-GAGUACUGGA-GUGC-GCGA-GCCUCUGGGAAAUCCGGUUCGCCGCC-A-CC---------
>Haloarcula marismortui 1
-----UU--AGGCGGCCACAGCGGU-GGGGUUGCCUC-CCGUACCCAUCCCGAACACGGAAGAUAAGCCCACCA-GCGUU-CCGG-G-GAGUACUGGA-GUGC-GCGA-GCCUCUGGGAAACGCGGUUCGCCGCC-A-CC---------
>Haloarcula marismortui 3
-----UU--AGGCGGCCACAGCGGU-GGGGUUGCCUC-CCGUACCCAUCCCGAACACGGAAGAUAAGCCCACCA-GCGUU-CCGG-G-GAGUACUGGA-GUGC-GCGA-GCCUCUGGGAAACCCGGUUCGCCGCC-A-CC---------
>Halobacterium salinarum 1
-----UUA-AGGCGGCCAUAGCGGU-GGGGUU-ACUC-CCGUACCCAUCCCGAACACGGAAGAUAAGCCCGCCU-GCGUU-CCGG-U-CAGUACUGGA-GUG--CGAG--CCUCUGGGAAAUCCGGUUCGCCGCC-U-AC-U-------
>Halobacterium salinarum 3
-----UUA-AGGCGGCCAUAGCGGU-GGGGUU-ACUC-CCGUACCCA-CCCGAACACGGAAGAUAAGCCCGCCU-GCGUU-CCGG-U-CAGUACUGGA-GUGC-GCGA-GCCUCUGGGAAAUCCGGUUCGCCGCC-U-AC-U-------
>Halococcus morrhuae 1
-----UUA-AGGCGGCCACAGCGGC-GGGGCG-ACUC-CCGUACCCAUCCCGAACACGGCAGAUAAGCCCGCCA-GCGUU-CCAG-C-GAGUACUGGA-GUGU-GCGA-ACCUCUGGGAAAACUGCCUCGCAAGA-G-GG-G-C-C---
>Halococcus morrhuae 2
-----UUA-AGGCGGCCACAGCGGC-GGGGCG-ACUC-CCGUACCCAUCCCGAACACGGCAGAUAAGCCCGCCA-GCGUU-CCAG-C-GAGUACUGGA-GUGU-GCGA-ACCUCUGGGAAAACUGCCUCGCAAGA-G-GG-G-C-C---
>Haloferax volcanii 1
-----UUA-AGGCGGCCAGAGCGGU-GAGGUU-CCAC-CCGUACCCAUCCCGAACACGGAAGUUAAGCUCACCU-GCGUU-CUGG-U-CAGUACUGGA-GUGA-GCGA-UCCUCUGGGAAAUCCAGUUCGCCGCC-C-CU-A-U-U---
>Haloferax volcanii 2
-----UUA-AGGCGGCCAGAGCGGU-GAGGUU-CCAC-CCGUACCCAUCCCGAACACGGAAGUUAAGCUCACCU-GCGUU-CUGG-U-CAGUACUGGA-GUGA-GCGA-UCCUCUGGGAAAUCCAGUUCGCCGCC-C-CU-A-U-U---
>Haloferax mediterranei 1
---------CGGCGGCCAGAGCGGU-GAGGUU-CCAC-CCGUACCCAUCCCGAACACGGAAGUUAAGCUCGCCU-GCGUU-CUGG-U-CAGUACUGGA-GUGA-GCGA-UCCUCUGGGAAAUCCAGUUCGCCGCC-U-U----------
>Haloferax mediterranei 2
-----UUA-GGGCGGCCAGAGCGGU-GAGGUU-CCAC-CCGUACCCAUCCCGAACACGGAAGUUAAGCUCGCCU-GCGUU-CUGG-U-CAGUACUGGA-GUGA-GCGA-UCCUCUGGGAAAUCCAGUUCGCCGCC-C-CU---------
>Halorubrum distributum 2
-----XU--AGGCGGCCGUAGCGGC-GGGUGU-CCUC-CCGUACCCAUCCCGAACACGGAAGAUAAGCUCGCCU-GCGUC-CCGG-C-AAGUACUGGA-GUGG-GCGA-CCCUCUGGGAACGUCGAUUCGCCGCC-U-X----------
>Halorubrum distributum 3
-----GA--AGGCGGCCAGAGCGGU-AGGGAA-ACAC-CCGUACCCAUUCCGAACACGGAAGUUAAGCCUCAGC-GUA---UCGU-G-AAGUACUGGA-GUGA-GCGA-UCCUCUGGGAACCACGAGUCGCCGCC-U-UC-C-C-----
>Methanobacterium formicicum 1
--AG-GU--UGGCGGCCAUAGCGGA-GGGGCC-AUAC-CUGGUCUCGUUUCGAUCCCAGAAGUGAAGUCCUCCU-GCGUU-UUGUUG-UUGUACUGUG-G-AC-GAGA-GUCUAUGGGAAGCUCAUAACGCUGCC-G-GC-C-UC----
>Methanohalobium evestigatum 1
-----NU--UAGCGGCCAUGGCGGC-AGGGUUAACUC-CUGUACCCAUCCCGAACACAGAAGAUAAGCCUGCCA-GCGUU-GUAU-A-CGGUACUAAA-GUGC-GAGA-GCCUUUGGGAACUAUACUCCGCUGCU-G-AU-C-AAU---
>Methanolobus tindarius 1
-----GG--UGGCGGCCAUAGCGGC-GGGGCA-AUUC-CUGUACCCAUCCCGAACACAGAAGAUAAGCCCGCCU-GCGUU-CUAU-A-CUGUACUAAA-GUAU-GAGA-GUCUUUGGGAAAUAUGGAACGCUGCC-A-CC-A-AC----
>Methanopyrus kandleri 1
--GU-GG--CGGCGGCCACAGCGGCCGGGGCC-ACACCCGGGCCACAUCUCGAACCCGGAAGUUAAGCCCGGCC-GCGUC-CCGG-G-UGGUACUGCG-CUCC-GAGA-GGGCGCGGGAAGCCCGGGAUGCCGCC-G-CC-G-U-CCCC
>Methanosarcina acetivorans 1
--AG-UU--UGGCGGCCAUAGCGGU-AGGGCA-ACUC-CUGUACCCAUCCCGAACACAGCAGAUAAGCCUGCCC-GCGUU-CCUU-A-CUGUACUGAA-GUGU-GCGA-GCCUUCGGGAACUCUGGAUCGCUGCC-A-AG-C-U-CACC
>Methanosarcina acetivorans 2
--AG-UU--UGGCGGCCAUAGCGGC-AGGGUA-ACUC-CUGUACCCAUCCCGAACACAGCAGAUAAGCCUGCCCCGCGUU-CCUU-A-CUGUACUGAA-GUGU-GCGA-GCCUUCGGGAACUCUGGAUCGCUGCC-A-AA-U-U-CACC
>Methanosarcina acetivorans 3
--NN--U--UGGCGGUCAUGACGGC-AGGGUA-ACUC-CUGUACCCAUUCCGAACACAGCAGAUAAGCCUGCCC-GUGUU-CCUU-A-CUGUACUGAA-GUGU-GCGA-GCCUUCGGGAACUCUGGAUCGCUGCC-A-AC-U-U-C---
>Methanosarcina mazei 1
--AG-UU--UGGCGGCCAUAGCGGC-AGGGCA-ACUC-CUGUACCCAUCCCGAACACAGAAGAUAAGCCUGCCC-GCGUU-CCUU-A-CUGUACUGAA-GUGU-GCGA-GCCUUCGGGAACUCUGGAUCGCUGCC-A-AG-C-U-CAC-
>Methanosarcina mazei 2
--AG-UU--UGGCGGCCAUAGCGGC-AGGGCA-ACUC-CUGUACCCAUCCCGAACACAGAAGAUAAGCCUGCCC-GCGUU-CCUU-A-CUGUACUGAA-GUGU-GCGA-GCCUUCGGGAACUCUGGAUCGCUGCC-A-AG-C-U-CACC
>Methanothermobacter thermautotrophicus 1
--GGUUU--UGGCGGUCAUGGCGUG-GGGGUU-AUAC-CUGAUCUCGUUUCGAUCUCAGUAGUUAAGUCCUGCU-GCGUU-GUGG-GUGUGUACUGCG-GUG--UUUU--GCUGUGGGAAGCCCAUUUCACUGCC-A-GC-C-A-UUCA
>Methanothermobacter thermautotrophicus 2
---GUUU--UGGCGGUCAUGGCGUG-GGGGUUUAUAC-CUGAUCUCGUUUCGAUCUCAGUAGUUAAGUCCUGCU-GCGUU-GUGG-GUGUGUACUGCG-GUU--UUUU--GCUGUGGGAAGCCCACUUCACUGCC-A-GA-C-C-ACCC
>Methanothermobacter thermautotrophicus 3
--GGUUU--UGGCGGUCAUGGCGUG-GGGGUUUAUAC-CUGAUCUCGUUUCGAUCUCAGUAGUUAAGUCCUGCU-GCGUU-GUGG-GUGUGUACUGCG-GUU--UUUU--GCUGUGGGAAGCCCACUUCACUGCC-A-GA-C-C-A---
>Methanococcus maripaludis 1
------CA-UAACGGUCAUAGCGGA-GGAGUU-ACAU-CCGAUCCCAUCCCGAUCUCGGAAAUUAAGCCCUCCU-GCGAU-UCAU-U-AAGUACUGCC------AUCU----GGUGGGAACAAUGUGACGCUGUU-A-GU-C-------
>Methanothermus fervidus 1
---G-GUA-CGGCGACCAUAGCGGG-GGGGCC-ACAC-CUGAACCCGUUCCGAUCUCAGAAGUUAAGCCCCCCU-GCGUU-GGAG-G-UGGUACUGCA-A-C--GUUA--GUUGCGGGAAGCCUCCAACGUCGCC-G-GC-C-CA----
>Natrialba magadii 1
----UUA--AGGCGGCCAUCGCGGC-GGGGUU-CCUC-CCGUACCCAUCCCGAACACGGAAGAUAAGCCUGCCU-GCGUA-UUGG-U-GAGUACUGGA-GUGG-GAGA-CCCUCUGGGAGAGCCGAUUCGCCGCC-CCUA-C-U-----
>Natrinema sp. 1
----U-UA-CGGCGGCCACAGCGGC-GAGGUA-CCUC-CCGUACCCAUCCCGAACACGGAAGAUAAGCUCGCCU-GCGUU-UCGG-U-CAGUACUGGA-GUGG-GCGA-CCCUCUGGGAACCCCGAUUCGCCGCC---AC-C-A-CUC-
>Thermococcus celer 1
---G-GUA-CGGCGGUCAUAGCGGC-GGGGUC-ACAC-CCGGUCUCGUUUCGACCCCGGAAGUUAAGCCCGCCA-GCGAU-CCCG-G-UUGUACUGCC-CUCC-GGGA-GGGGGCGGGAA-CCGGGGACGCCGCC-G-GC-C-A-C---
>Thermococcus kodakarensis 1
---G-GCA-CGGCGGCCAUAGCGGC-GGGGCC-ACAC-CCGGUCUCGUUUCGACCCCGGAAGUUAAGCCCGCCA-GCGUU-CCCG-G-GUGUACUGCC-CUCC-GAGA-GGGGGCGGGAAACCGGGAACGCCGCC-G-GC-C-A-C---
>Thermococcus kodakarensis 2
---G-GUA-CGGCGGCCAUAGCGGC-GGGGCC-ACAC-CCGGUCUCGUUUCGACCCCGGAAGUUAAGCCCGCCA-GCGUU-CCCG-G-GUGUACUGCC-CUCC-GAGA-GGGGGCGGGAAACCGGGAACGCCGCC-G-GC-C-A-C---
>Pyrococcus abyssi 1
--GG-CA--CGGCGGCCAUAGCGGG-GGGGCC-ACAC-CCGGUCUCAUUUCGAACCCGGAAGUUAAGCCCCCCA-GCGAU-CCCG-G-UUGUACUGCC-CUCC-GAGA-GGGGGCGGGAAGCCGGGGACGCCG----------------
>Pyrococcus furiosus 1
---------CGGCGGCCAUAGCGGG-GGG-CC-ACAC-CCGGUCUCAUUUCGAACCCGGAAGUUAAGCCCCCCA-GCGAU-CCCG-G-UUGUACUGCC-CUCC-GAGA-GGGGGCGGGAAGCCGGGGACGCCGCC-G-GCCACU-----
>Pyrococcus furiosus 2
---------CGGCGGCCAUAGCGGG-GGGGCC-ACAC-CCGGUCUCAUUUCGAACCCGGAAGUUAAGCCCCCCA-GCGAU-CCCG-G-UUGUACUGCC-CUCC-GAGA-GGGGGCGGGAAGCCGGGGACGCCGCC-G-GCCACUAUC--
>Pyrococcus horikoshii 1
-------A-CGGCGGCCAUAGCGGG-GGGGUU-ACAC-CCGGUCUCAUUUCGAACCCGGAAGUUAAGCCCCCCA-GCGAU-CCCG-G-UUGUACUGCC-CUCC-GAGA-GGGGGCGGGAAGCCGGGGACGCCGCC-G-GCCA-------
>Pyrococcus horikoshii 2
-------A-CGGCGGCCAUAGCGGG-GGGGUU-ACAC-CCGGUCUCAUUUCGAACCCGGAAGUUAAGCCCCCCA-GCGAU-CCCG-G-UUGUACUGCC-CUCC-GAGA-GGGGGCGGGAAGCCGGGGACGCCGCC-G-GCCA-------
>Thermoplasma volcanium 1
-----GG--CAACGGUCAUAGCAAU-AGGGAA-ACAC-CAGAUCCCAUUCCGAACUCGACGGUUAAGCCUGUU--GCGUA-UUAC-G-UUGUACUGUA-UUCC-GCGA-GGGUACGGGAAGCGUAGUAUGCUGUU-G-CCAUU------
>Methanococcoides methylutens 1
----AGC--UAGUGGCCAUAGUGGC-AGGGAC-CCUC-CUGUUCACCUUCCGAACACAGAAGAUAAGCCUGCCC-ACGUU-GCUU-A-CUGUACUGAG-GUAC--AGA-GUCCUCGGGAAAUCUGCGUCGCUGCU-A-GCGGN------
>Halobacterium salinarum 2
-----UUA-AGGCGGCCAUAGCGGU-GGGGUU-ACUC-CCGUACCCAUCCCGAACACGGAAGAUAAGCCCGCCU-GCGUU-CCGG-U-CAGUACUGGA-GUGC-GCGA-GCCUCUGGGAAAUCCGGUUCGCCGCC-U-AC-U-------
>Halobacterium salinarum 2
-----UUA-AGGCGGCCAUAGCGGU-GGGGUU-ACUC-CCGUACCCAUCCCGAACACGGAAGAUAAGCCCGCCU-GCGUU-CCGG-U-CAGUACUGGA-GUGC-GCGA-GCCUCUGGGAAAUCCGGUUCGCCGCC-U-AC-U-------
>Halobacterium sp. 1
-----UUA-AGGCGGCCAUAGCGGU-GGGGUU-ACUC-CCGUACCCAUCCCGAACACGGAAGAUAAGCCCGCCU-GCGUU-CCGG-U-CAGUACUGGA-GUGC-GCGA-GCCUCUGGGAAAUCCGGUUCGCCGCC-U-AC-U-------
>Halobacterium sp. 2
-------U-UGGCGACCAUAGCGGC-GAGUGA-CCUC-CCGUACCCAUCCCGAACACGGAAGAUAAGCUCGCCU-GCGUU-UCGG-U-CAGUACUGGA-UUGG-GCGA-CCCUCUGGGAAAUCUGAUUCGCCGCC-A-CC---------
>Haloferax volcanii 3
-----UUA-AGGCGGCCAGAGCGGU-GAGGUU-CCAC-CCGUACCCAUCCCGAACACGGAAGUUAAGCUCACCU-GCGUU-CUGG-U-CAGUACUGGA-GUGA-GCGA-UCCUCUGGGAAAUCCAGUUCGCCGCC-C-CU---------
>Halorubrum distributum 1
-----GU--AGGCGGCCAAAGCGGC-AGGGAA-AGAC-CCGUACCCAUUCCGAACACGGAAGUGAAGCCUGCCA-GCGUA-CCAG-C-UAGUACUGGA-GUGG-GAGA-CCCUCUGGGAGCGCUGGUUCGCCGCC-U-AC-U-C-----
>Halorubrum distributum 4
-----GA--AGGCGGCCAGAGCGGU-GGGGAA-ACAC-CCGUACCCAUUCCGAACACGGAAGUUAAGCCCACCA-GCGUA-CCGU-G-AAGUACUGGA-GUGA-GCGA-UCCUCUGGGAACCACGAGUCGCCGCC-U-GC-C-------
>Halorubrum distributum 5
-----GU--AGGCGGCCAGAGCGGU-AGGGAA-ACAC-CCGUACCCAUUCCGAACACGGAAGUUAAGCCUACCA-GCGUA-UCGU-G-AAGUACUGGA-GUGA-GCGA-UCCUCAGGGAACCACGAGUCGCCGCC-U-AC-C-------
>Halorubrum distributum 6
-----GU--AGGCGGCCAGAGCGGU-AGGGAA-ACAC-CCGUACCCAUUCCGAACACGGAAGUUAAGCCUACCA-GCGUA-UCGU-G-AAGUACUGGA-GUGA-GCGA-UCCUCUGGGAACCGCGGUUCGCCGCC-U-GC-C-------
>Halorubrum distributum 7
---------UCGCGGCCAGGGCGGA-GGGGAA-ACAC-CCGUACCCAUUCCGAACACGGAAGUGAAGCCCUCCA-GCGAA-CCAG-C-UAGUACUAGA-GUGG-GAGA-CCCUCUGGGAGCGCUGGUUCGCCGCC-A-CC---------
>Halorubrum saccharovorum 1
---G-GC--A-GCGGCCAUAGCGGU-GGGGCG-ACAC-CCGUACCCAUUCCGAACACGGAAGUUAAGCCCACCA-GCGUA-CCGG-G-AAGUACUGGA-GUGA-GCGA-UCCUCUGGGAAGCGGGGUUCGCCGCC-U-GC-C-C-----
>Halorubrum terrestre 1
-----GU--AGGCGGCCAGAGCGGU-AGGGAA-ACAC-CCGUACCCAUUCCGAACACGGAAGUUAAGCCUACCA-GCGUA-UCGU-G-AAGUACUGGA-GUGA-GCGA-UCCUCAGGGAACCACGAGUCGCCGCC-U-AC-C-------
>Halorubrum terrestre 2
-----GA--AGGCGGCCAGAGCGGU-GGGGAA-ACAC-CCGUACCCAUUCCGAACACGGAAGUUAAGCCCACCA-GCGUA-CCGU-G-AAGUACUGGA-GUGA-GCGA-UCCUCUGGGAACCACGAGUCGCCGCC-U-GC-C-------
>Halorubrum terrestre 3
-----GU--AGGCGGCCAGAGCGGU-AGGGAA-ACAC-CCGUACCCAUUCCGAACACGGAAGUUAAGCCUACCA-GCGUA-UCGU-G-AAGUACUGGA-GUGA-GCGA-UCCUCUGGGAACCACGAGUCGCCGCC-U-AC-Y-------
>Haloterrigena turkmenica 1
------X--UGGCGGCUAUAGCGGC-GGGGAA-ACAC-CCGUACUCAUCCCGAACACGGACGUUAAGCCCGCCU-GCGUU-UCGG-C-GAGUACUGGA-GUGC-GCGA-GCCUCUGGGAGAGCUGAUUCGCCGUC-A-CU---------
>Methanobrevibacter ruminantium 1
U-AG-GUU-UGGCGGUCAUAGCGAU-GGGGUU-ACAC-CUGGUCUCGUUUCGAUCCCAGAAGUUAAGUCUUUUC-GCGUU-UUGUUU-GUGUACUAUG-G-GU-UCCG-GUCUAUGGGAAUUUCAUUUAGCUGCC-A-GC-U-U-UUU-
>Methanocaldococcus jannaschii 1
--UG-GUA-CGGCGGUCAUAGCGGG-GGGGCC-ACAC-CCGAACCCAUCCCGAACUCGGAAGUUAAGCCCCCCA-GCGAU-GCCC-C-GAGUACUGCC------AUCU----GGCGGGAAAGGGGCGACGCCGCC-G-GC-C-A-C---
>Methanocaldococcus jannaschii 2
--UG-GUA-CGGCGGUCAUAGCGGG-GGGGCC-ACAC-CCGAACCCAUCCCGAACUCGGAAGUUAAGCCCCCCA-GCGAU-GCCC-C-GAGUACUGCC------AUCU----GGCGGGAAAGGGGCGACACCGCC-G-GC-C-A-C---
>Methanococcus vannielii 1
--UG-AUA-CGGCGGUCAUAGCGGG-GGUGUA-ACAU-CCGAUCCCAUCCCGAUCUCGGAAAUUAAGCCCUCCA-GCGAU-UCCU-U-AAGUACUGCU------AUCU----AGUGGGAACAAGGUGACGCUGCC-G-AU-C-A-C---
>Methanococcus vannielii 2
--UG-ACA-UAACGGUCAAAGCGGA-GGUGUA-ACAU-CCGAUCCCAUCCCGAUCUCGGAAAUUAAGCCCUCCA-GCGAU-UCUU-U-AAGUACUGCU------AUCU----AGUGGGAACAAAGUGACGCCGUU-A-GU-C-A-C---
>Methanohalophilus halophilus 1
---N-NU--UGGCGGCCAUGGCGGC-GGGGUA-ACUC-CUGUACCCAUCCCGAACACAGCAGAUAAACCCGCCC-GCGUU-CCGU-A-CGGUACUAAA-GUGC-GCGA-GCCUUUGGGAACUGCGGAUAGCUGCC-A-GC-U-C-C---
>Methanolobus tindarius 2
-GGA-GUU-UGGCGGCCAUAGCGGC-GGGGCA-AUUC-CUGUACCCAUCCCGAACACAGAAGAUAAGCCCGCCU-GCGUU-CUAU-A-CUGUACUAAA-GUAU-GAGA-GUCUUUGGGAAAUAUGGAACGCUGCC-A-UC-U-C-C---
>Thermococcus celer 2
---G-GUA-CGGCGGUCAUAGCGGC-GGGGUC-ACAC-CCGGUCUCGUUUCGACCCCGGAAGUUAAGCCCGCCA-GCGAU-CCCG-G-UUGUACUGCC-CUCC-GGGA-GGGGGCGGGAAGCCGGGGACGCCGCC-G-GC-C-A-CU--
>Methanosarcina barkeri 1
GGAG-UU--UGGCG-CCAUAGCGGC-AGUGUA-ACUC-CUGUACCCAUCCCGAACACAGUAGAUAAGCCUGCCC-GCGUU-CCUU-A-CUGUACUGAA-GUGU-GCGA-GCCUUCGGGAACUCUGGAUCGCUGCC-A-UA-C-U-CACC
>Methanosarcina vacuolata 1
--GA-UC--UGGCAGCCAUAGCGGC-AGGUGU-AAUC-CUGUACCCAUCCCGAACACAGUAGAUAAGCCUGCCC-GCGUU-CCUU-GCCUGUACUGAA-G-U-GUGCGA-GCUUCGGGAACUCUGGAUCG-UGCC-A-UA-U-C-AGU-
>Methanospirillum hungatei 1
--UC-AA--UAGCGGCCACAGCAGG-UGUGUC-ACAC-CCGUUCCCAUUCCGAACACGGAAGUUAAGACACCUC-ACGUG-GAUG-A-CGGUACUGAG-GUAC-GCGA-GUCCUCGGGAAAUCAUCCUCGCUGCU-A-UU-G-U-U---
>Methanothermobacter thermautotrophicus 4
-----GU--UGGCGGUCAUGGCGUG-GGGUUU-AUAC-CUGAUCUCGUUUCGAUCUCAGUAGUUAAGUCCUGCU-GCGUU-GUGG-GUGUGUACUGCG-G-U-UUUUU--GCUGUGGGAAGCCCACUUCACUGCC-A-GA-CAA-----
>Methanothermobacter thermautotrophicus 5
-----GU--UGGCGGUCAUGGCGUG-GGGUUA-AUAC-CUGAUCUCGUUUCGAUCUCAGUAGUUAAGUCCUGCU-GCGUU-GUGG-GUGUGUACUGCG-G-U-UUUUU--GCUGUGGGAAGCCCACUUCACUGCC-A-GC-A-C-CC--
>Methanothermobacter thermautotrophicus 6
-GGG-GCA-UGGCGGUCAUGGCGCA-GGGGUU-AUAC-CUGAUCUCGUUUCGAUCUCAGUAGUUAAGUCCUGCU-GCGUU-GUGG-GUGUGUACUGCG-G-U-UUUUU--GCUGUGGGAAGCCCACUUCACUGCC-A-GC-CAC-U---
>Methanothermococcus thermolithotrophicus 1
--UG-AUA-UAACGGUCAUAGCGGA-GGAGCC-ACAU-CCGAUCCCGUCCCGAUCUCGGAAAUUAAGCCCUCCA-GCGAU-ACCC-U-AAGUACUGCC------AUUU----GGUGGGAACAGGGUGACGCUGUU-G-AU-C-A-C---
>Natronococcus occultus 1
-----UA--AGGCGGCCAUAGCGGC-GGGGUU-CCUC-CCGUACCCAUCCCGAACACGGAAGAUAAGCCCGCCU-GCGUA-UUGG-U-GAGUACUGGA-GUGG-GAGA-CCCUCUGGGAGAGCUGAUUCGCUGCU-U-UA---------
>Natronomonas pharaonis 1
------A--AGGCGGCCAUAGCGGC-GGGGUC-CCUC-CCGUACCCAUCCCGAACACGGAAGAUAAGCCCGCCU-GCGUA-UUGG-U-GAGUACUGGA-GUGG-GAGA-CCCUCUGGGAGAGCCGAUUCGCCGCC-U-U----------
>Natronomonas pharaonis 2
------A--AGGCGGCCAUAGCGGC-GGGGUC-CCUC-CCGUACCCAUCCCGAACACGGAAGAUAAGCCCGCCU-GCGUA-UUGG-U-GAGUACUGGA-GUGG-GAGA-CCCUCUGGGAGAGCUGAUUCGCCGCC-U-U----------
>Pyrococcus woesei 1
---G-GUA-CGGCGGUCAUAGCGGG-GGGGCC-ACAC-CCGGUCUCAUUUCGAACCCGGAAGUUAAGCCCCCCA-GCGAU-CCCG-G-CUGUACUGCC-CUCC-GAGA-GGGGGCGGGAA-CCGGGGACGCCGCC-G-GC-C-A-----
>Thermoplasma acidophilum 1
-----GG--CAACGGUCAUAGCAGC-AGGGAA-ACAC-CAGAUCCCAUUCCGAACUCGACGGUUAAGCCUGCU--GCGUA-UUGC-G-UUGUACUGUA-UGCC-GCGA-GGGUACGGGAAGCGCAAUAUGCUGUU-A-CC---A-CU--
>Methanothermobacter thermautotrophicus 7
-GGGUUU--UGGCGGUCAUGGCGUG-GGGGUUUAUAC-CUGAUCUCGUUUCGAUCUCAGUAGUUAAGUCCUGCU-GCGUU-GUGG-GUGUGUACUGCG-G-U-UUUUU--GCUGUGGGAAGCCCACUUCACUGCC-A-GA-C-CACCC-
>Nanoarchaeum equitans 1
GUUUCGUG-GGAGGGCCAUAGCGGCCCGGGAA-CCAC-CCGUACCCAUCUCGAACACGGAAGUUAAGCCGGGCC-GCGUC-CCGA-GU-GGUACUGCC-C-C-GCGAA--GGGGUGGGAAGCUCGGGAUGCCC----------------
>uncultured euryarchaeote 37F11 1
GAUGGGU--GCACGGUCAUAGCGGU-GGAGUU--UAC-CCGGUCUCAUCCCGAACCCGGAAGUCAAGCCCUCCU-GCGUC-UGUC-CC-AAUACUGUG-GUAC-GAGA-GUCCACGGGAACGGCGGUC-ACUGUG-C------------